UHGV-0043009

Genome information

Genome length 32,251 bps

CDS count 41

Completeness 79.87% (medium-quality)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043009
vOTU ID	vOTU-021178
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5340
BioSample	SAMEA728946
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.76
Jumbo phage	No

Genome content
Genome length	32,251 bps
GC content	39.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.19%
Average CDS length	734.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043009_1	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0043009_1	eggNOG-mapper	908337.HMPREF9257_0543	NA	NA
UHGV-0043009_1	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0043009_3	PHROG	phrog_1048	NA	unknown function
UHGV-0043009_3	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0043009_3	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0043009_3	Pfam	PF11195	NA	DUF2829
UHGV-0043009_3	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0043009_4	KOfam	K07000	NA	NA
UHGV-0043009_4	UniRef90	UniRef90_UPI00048CE69E	alpha/beta hydrolase	NA
UHGV-0043009_4	eggNOG-mapper	411473.RUMCAL_00467	Uncharacterised protein family (UPF0227)	NA
UHGV-0043009_4	Pfam	PF05728	Uncharacterised protein family (UPF0227)	UPF0227
UHGV-0043009_4	COG	COG3150	Predicted esterase YcpF, UPF0227 family	NA
UHGV-0043009_5	KOfam	K04758	feoA; ferrous iron transport protein A	NA
UHGV-0043009_5	UniRef90	UniRef90_R7MM21	Fe2+ transport system protein A	NA
UHGV-0043009_5	eggNOG-mapper	1160721.RBI_I00821	FeoA	NA
UHGV-0043009_5	Pfam	PF04023	FeoA domain	FeoA
UHGV-0043009_5	COG	COG1918	Fe2+ transport protein FeoA	NA
UHGV-0043009_6	KOfam	K04758	feoA; ferrous iron transport protein A	NA
UHGV-0043009_6	UniRef90	UniRef90_A0A174FS09	FeoA family protein	NA
UHGV-0043009_6	eggNOG-mapper	411473.RUMCAL_01173	Fe2 transport system protein A	NA
UHGV-0043009_6	Pfam	PF04023	FeoA domain	FeoA
UHGV-0043009_6	COG	COG1918	Fe2+ transport protein FeoA	NA
UHGV-0043009_7	PHROG	phrog_15609	NA	unknown function
UHGV-0043009_7	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0043009_7	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0043009_7	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0043009_8	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0043009_8	PHROG	phrog_1499	NA	unknown function
UHGV-0043009_8	UniRef90	UniRef90_UPI0019CFC470	AAA family ATPase	NA
UHGV-0043009_8	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0043009_8	PADLOC	AAA_15	NA	NA
UHGV-0043009_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-0043009_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0043009_8	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0043009_9	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043009_9	UniRef90	UniRef90_UPI001C0F250F	AAA family ATPase	NA
UHGV-0043009_9	eggNOG-mapper	641112.ACOK01000073_gene2874	AAA domain	NA
UHGV-0043009_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-0043009_9	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0043009_10	PHROG	phrog_2698	NA	unknown function
UHGV-0043009_10	UniRef90	UniRef90_A0A3D1HDU6	NA	NA
UHGV-0043009_10	eggNOG-mapper	641112.ACOK01000073_gene2875	NA	NA
UHGV-0043009_10	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0043009_11	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0043009_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0043009_11	UniRef90	UniRef90_R7GUH4	Helicase C-terminal domain protein	NA
UHGV-0043009_11	eggNOG-mapper	641112.ACOK01000073_gene2876	helicase superfamily c-terminal domain	NA
UHGV-0043009_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0043009_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0043009_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0043009_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0043009_11	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0043009_12	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0043009_12	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0043009_12	UniRef90	UniRef90_R7GSM0	Primase 2	NA
UHGV-0043009_12	eggNOG-mapper	641112.ACOK01000073_gene2877	Primase C terminal 2 (PriCT-2)	NA
UHGV-0043009_12	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0043009_12	Pfam	PF13481	AAA domain	AAA_25
UHGV-0043009_12	COG	COG3598	RecA-family ATPase	NA
UHGV-0043009_12	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0043009_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0043009_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043009_13	UniRef90	UniRef90_A0A3D5KWI4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0043009_13	eggNOG-mapper	641112.ACOK01000073_gene2878	endodeoxyribonuclease RusA	NA
UHGV-0043009_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0043009_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0043009_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0043009_16	PHROG	phrog_8684	NA	unknown function
UHGV-0043009_16	UniRef90	UniRef90_A0A845R770	YopX domain-containing protein	NA
UHGV-0043009_16	eggNOG-mapper	563008.HMPREF0665_02419	YopX protein	NA
UHGV-0043009_16	Pfam	PF09643	YopX protein	YopX
UHGV-0043009_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0043009_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043009_18	UniRef90	UniRef90_UPI001D0605E0	NA	NA
UHGV-0043009_18	eggNOG-mapper	1127695.HMPREF9163_00372	sigma factor activity	NA
UHGV-0043009_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0043009_19	PHROG	phrog_2412	NA	unknown function
UHGV-0043009_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043009_20	PHROG	phrog_10250	NA	unknown function
UHGV-0043009_20	UniRef90	UniRef90_A0A1C6E9G9	Phage terminase, large subunit, PBSX family	NA
UHGV-0043009_20	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0043009_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0043009_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043009_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043009_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0043009_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0043009_21	UniRef90	UniRef90_A0A349GQA3	Phage capsid protein	NA
UHGV-0043009_21	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0043009_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043009_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0043009_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0043009_22	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0043009_22	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0043009_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0043009_22	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0043009_22	COG	COG2369	NA	NA
UHGV-0043009_22	Structural annotation	PF06152	NA	NA
UHGV-0043009_23	Structural annotation	PF16244	NA	NA
UHGV-0043009_26	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0043009_26	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0043009_26	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0043009_27	PHROG	phrog_267	major head protein	head and packaging
UHGV-0043009_27	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0043009_27	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-0043009_27	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043009_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0043009_28	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0043009_29	PHROG	phrog_3366	NA	unknown function
UHGV-0043009_29	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0043009_29	Pfam	PF20536	NA	DUF6751
UHGV-0043009_29	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0043009_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0043009_30	UniRef90	UniRef90_A0A3C0IHV2	Capsid protein	NA
UHGV-0043009_30	eggNOG-mapper	641112.ACOK01000073_gene2898	Minor capsid protein	NA
UHGV-0043009_30	Structural annotation	PF11114	NA	NA
UHGV-0043009_31	PHROG	phrog_3266	tail completion	connector
UHGV-0043009_31	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0043009_31	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0043009_31	Structural annotation	PF12691	NA	NA
UHGV-0043009_32	PHROG	phrog_3099	NA	unknown function
UHGV-0043009_32	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0043009_32	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0043009_33	PHROG	phrog_4450	NA	unknown function
UHGV-0043009_33	UniRef90	UniRef90_UPI001CF2E786	AP endonuclease	NA
UHGV-0043009_33	Pfam	PF20378	NA	DUF6673
UHGV-0043009_33	Structural annotation	PF20378	NA	NA
UHGV-0043009_34	PHROG	phrog_706	NA	unknown function
UHGV-0043009_34	UniRef90	UniRef90_D4LDZ1	Bacteriophage Gp15 protein	NA
UHGV-0043009_34	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0043009_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0043009_34	Structural annotation	PF06854	NA	NA
UHGV-0043009_35	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0043009_35	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-0043009_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0043009_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0043009_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0043009_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0043009_39	PHROG	phrog_1863	NA	unknown function
UHGV-0043009_39	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0043009_40	PHROG	phrog_13256	NA	unknown function
UHGV-0043009_40	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0043009_41	PHROG	phrog_21357	endolysin	lysis
UHGV-0043009_41	UniRef90	UniRef90_A0A3C2BCE4	Peptidase C51 domain-containing protein (Fragment)	NA
UHGV-0043009_41	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0043009_41	Pfam	PF05257	CHAP domain	CHAP
UHGV-0043009_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0043009_41	COG	COG1388	LysM repeat	NA
UHGV-0043009_41	Structural annotation	PF01471, TIGR02594, NF038080, COG3409, COG3942	NA	NA