UHGV-0043107

Genome information

Genome length 42,795 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043107
vOTU ID	vOTU-000972
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_8944
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.17
Jumbo phage	No

Genome content
Genome length	42,795 bps
GC content	53.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.33%
Average CDS length	557.74 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043107_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043107_1	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0043107_1	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0043107_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0043107_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0043107_2	PHROG	phrog_13845	NA	unknown function
UHGV-0043107_2	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0043107_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0043107_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043107_3	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0043107_3	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0043107_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043107_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043107_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0043107_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043107_4	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0043107_4	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0043107_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043107_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0043107_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043107_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043107_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0043107_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0043107_5	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0043107_5	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0043107_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0043107_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0043107_5	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0043107_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043107_6	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0043107_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0043107_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043107_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0043107_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043107_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0043107_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043107_7	PHROG	phrog_749	NA	unknown function
UHGV-0043107_7	UniRef90	UniRef90_UPI00099504CB	phage head-tail connector protein	NA
UHGV-0043107_7	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0043107_8	PHROG	phrog_19734	NA	unknown function
UHGV-0043107_8	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0043107_8	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0043107_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043107_9	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0043107_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0043107_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043107_10	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0043107_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0043107_10	Structural annotation	TIGR01725	NA	NA
UHGV-0043107_11	PHROG	phrog_88	major tail protein	tail
UHGV-0043107_11	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0043107_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0043107_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043107_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0043107_14	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0043107_14	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0043107_14	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0043107_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0043107_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0043107_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0043107_14	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0043107_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043107_15	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0043107_15	eggNOG-mapper	748727.CLJU_c03670	tail component	NA
UHGV-0043107_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0043107_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043107_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0043107_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0043107_16	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0043107_16	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0043107_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0043107_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043107_16	COG	COG4926	Phage-related protein	NA
UHGV-0043107_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043107_18	Structural annotation	PF10651, NF010435	NA	NA
UHGV-0043107_19	PHROG	phrog_19280	NA	unknown function
UHGV-0043107_19	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-0043107_19	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-0043107_19	Pfam	PF19789	NA	DUF6273
UHGV-0043107_19	Structural annotation	PF19789	NA	NA
UHGV-0043107_20	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0043107_20	eggNOG-mapper	1519439.JPJG01000059_gene1941	NA	NA
UHGV-0043107_20	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0043107_22	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0043107_22	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0043107_22	UniRef90	UniRef90_A0A844D6B7	Reverse transcriptase domain-containing protein	NA
UHGV-0043107_22	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0043107_22	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0043107_22	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0043107_22	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0043107_22	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0043107_24	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-0043107_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0043107_24	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0043107_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0043107_25	PHROG	phrog_291	endolysin	lysis
UHGV-0043107_25	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0043107_25	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0043107_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0043107_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0043107_25	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0043107_27	PHROG	phrog_15303	NA	unknown function
UHGV-0043107_31	PHROG	phrog_16490	NA	unknown function
UHGV-0043107_31	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0043107_32	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0043107_33	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0043107_34	KOfam	K14059	int; integrase	NA
UHGV-0043107_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0043107_34	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0043107_34	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0043107_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043107_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043107_34	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0043107_35	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0043107_35	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043107_38	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0043107_38	Structural annotation	COG5342	NA	NA
UHGV-0043107_41	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0043107_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043107_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043107_42	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0043107_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043107_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043107_42	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0043107_43	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0043107_46	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0043107_49	Structural annotation	PF10346, MF_00337, NF010671	NA	NA
UHGV-0043107_52	PHROG	phrog_14970	NA	unknown function
UHGV-0043107_52	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0043107_52	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0043107_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0043107_53	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0043107_53	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0043107_55	PHROG	phrog_7566	NA	unknown function
UHGV-0043107_55	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0043107_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043107_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043107_56	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0043107_56	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0043107_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043107_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043107_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043107_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043107_56	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0043107_57	PHROG	phrog_6969	NA	unknown function
UHGV-0043107_57	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0043107_57	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0043107_57	Pfam	PF19481	NA	DUF6017
UHGV-0043107_57	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0043107_57	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0043107_59	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0043107_59	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0043107_59	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0043107_59	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0043107_59	Pfam	PF13614	AAA domain	AAA_31
UHGV-0043107_59	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0043107_59	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0043107_60	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0043107_61	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0043107_61	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0043107_61	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0043107_61	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0043107_61	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043107_61	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0043107_61	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0043107_62	Structural annotation	PF04545	NA	NA
UHGV-0043107_65	PHROG	phrog_7711	NA	unknown function
UHGV-0043107_65	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0043107_66	Structural annotation	PF14354	NA	NA
UHGV-0043107_70	PHROG	phrog_8680	NA	unknown function
UHGV-0043107_70	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0043107_70	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0043107_70	Pfam	PF14386	NA	DUF4417
UHGV-0043107_70	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0043107_70	Structural annotation	PF14386	NA	NA