UHGV-0043233

Genome information

Genome length 18,734 bps

CDS count 26

Completeness 61.06% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043233
vOTU ID	vOTU-036964
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_11039
BioSample	SAMEA2042446
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.48
Jumbo phage	No

Genome content
Genome length	18,734 bps
GC content	38.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	96.22%
Average CDS length	695.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043233_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0043233_1	PHROG	phrog_291	endolysin	lysis
UHGV-0043233_1	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0043233_1	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-0043233_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0043233_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0043233_1	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0043233_2	PHROG	phrog_443	holin	lysis
UHGV-0043233_2	UniRef90	UniRef90_UPI001C10F455	holin	NA
UHGV-0043233_2	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0043233_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0043233_2	Structural annotation	PF16945	NA	NA
UHGV-0043233_3	PHROG	phrog_4257	NA	unknown function
UHGV-0043233_7	Structural annotation	PF11314, PF14600, PF02839	NA	NA
UHGV-0043233_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-0043233_8	UniRef90	UniRef90_Q73EE6	Phage structural protein, truncation	NA
UHGV-0043233_8	eggNOG-mapper	936375.HMPREF1152_0017	NA	NA
UHGV-0043233_8	Structural annotation	PF20747	NA	NA
UHGV-0043233_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0043233_9	UniRef90	UniRef90_A0A1I1Y2T7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0043233_9	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0043233_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0043233_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043233_10	UniRef90	UniRef90_UPI0009854788	phage tail family protein	NA
UHGV-0043233_10	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0043233_11	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0043233_11	UniRef90	UniRef90_V9HUK2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0043233_11	eggNOG-mapper	755731.Clo1100_0555	tail tape measure protein	NA
UHGV-0043233_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0043233_11	Structural annotation	COG5280	NA	NA
UHGV-0043233_12	PHROG	phrog_709	NA	unknown function
UHGV-0043233_12	Structural annotation	PF11836	NA	NA
UHGV-0043233_13	PHROG	phrog_88	major tail protein	tail
UHGV-0043233_13	UniRef90	UniRef90_UPI0011DDC47F	phage tail protein	NA
UHGV-0043233_13	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0043233_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043233_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0043233_14	PHROG	phrog_88	major tail protein	tail
UHGV-0043233_14	UniRef90	UniRef90_UPI00195C52C1	phage tail protein	NA
UHGV-0043233_14	eggNOG-mapper	689781.AUJX01000031_gene105	phage major tail protein, phi13 family	NA
UHGV-0043233_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043233_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0043233_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043233_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043233_15	Structural annotation	TIGR01725	NA	NA
UHGV-0043233_17	PHROG	phrog_32328	NA	unknown function
UHGV-0043233_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043233_18	PHROG	phrog_36595	NA	unknown function
UHGV-0043233_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043233_19	UniRef90	UniRef90_UPI001BED1ECC	phage major capsid protein	NA
UHGV-0043233_19	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0043233_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043233_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043233_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043233_20	KOfam	K06904	NA	NA
UHGV-0043233_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0043233_20	UniRef90	UniRef90_V9H369	HK97 family phage prohead protease	NA
UHGV-0043233_20	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-0043233_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0043233_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0043233_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0043233_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0043233_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043233_21	UniRef90	UniRef90_A0A1M6DQ94	Phage portal protein, HK97 family	NA
UHGV-0043233_21	eggNOG-mapper	1123288.SOV_2c03640	Phage portal protein	NA
UHGV-0043233_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043233_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043233_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043233_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043233_22	UniRef90	UniRef90_A0A1M6DQA4	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043233_22	eggNOG-mapper	1123288.SOV_2c03650	Phage Terminase	NA
UHGV-0043233_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043233_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043233_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043233_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0043233_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0043233_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0043233_24	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0043233_24	UniRef90	UniRef90_I0GRZ5	Putative phage protein	NA
UHGV-0043233_24	eggNOG-mapper	927704.SELR_18240	adenylate kinase activity	NA
UHGV-0043233_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0043233_24	Pfam	PF13671	AAA domain	AAA_33
UHGV-0043233_24	COG	COG0563	Adenylate kinase or related kinase	NA
UHGV-0043233_24	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0043233_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0043233_25	UniRef90	UniRef90_A0A417BYR0	Helix-turn-helix domain-containing protein	NA
UHGV-0043233_25	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0043233_25	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0043233_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0043233_25	Structural annotation	PF07141	NA	NA
UHGV-0043233_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043233_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4