UHGV-0043247

Genome information

Genome length 30,276 bps

CDS count 46

Completeness 89.45% (medium-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043247
vOTU ID	vOTU-025884
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4184
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.14
Jumbo phage	No

Genome content
Genome length	30,276 bps
GC content	32.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.75%
Average CDS length	631.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043247_2	eggNOG-mapper	1033744.CAEL01000029_gene1268	NA	NA
UHGV-0043247_3	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0043247_3	UniRef90	UniRef90_UPI0011DDC8B1	phage tail protein	NA
UHGV-0043247_3	eggNOG-mapper	1033744.CAEL01000029_gene1269	NA	NA
UHGV-0043247_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0043247_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043247_3	COG	COG4926	Phage-related protein	NA
UHGV-0043247_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043247_4	UniRef90	UniRef90_UPI0011DDB9D8	phage tail family protein	NA
UHGV-0043247_5	PHROG	phrog_240	head protein	head and packaging
UHGV-0043247_5	eggNOG-mapper	1033744.CAEL01000029_gene1271	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0043247_5	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0043247_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043247_6	UniRef90	UniRef90_UPI000306EF07	phage tail family protein	NA
UHGV-0043247_6	eggNOG-mapper	1033744.CAEL01000029_gene1272	phage tail	NA
UHGV-0043247_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0043247_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0043247_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043247_6	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0043247_7	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0043247_7	UniRef90	UniRef90_UPI0011DD3B98	phage tail tape measure protein	NA
UHGV-0043247_7	eggNOG-mapper	1111134.HMPREF1253_0374	Phage-related minor tail protein	NA
UHGV-0043247_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0043247_7	Pfam	PF15056	Neuritin protein family	NRN1
UHGV-0043247_7	Pfam	PF05017	TMP repeat	TMP
UHGV-0043247_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0043247_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0043247_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0043247_8	PHROG	phrog_709	NA	unknown function
UHGV-0043247_8	UniRef90	UniRef90_K6DJ01	Prophage pi2 protein 40	NA
UHGV-0043247_8	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-0043247_8	Structural annotation	PF11836	NA	NA
UHGV-0043247_9	PHROG	phrog_88	major tail protein	tail
UHGV-0043247_9	UniRef90	UniRef90_UPI0011DDC47F	phage tail protein	NA
UHGV-0043247_9	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0043247_9	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0043247_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043247_9	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0043247_10	PHROG	phrog_78	tail terminator	connector
UHGV-0043247_10	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-0043247_10	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0043247_11	UniRef90	UniRef90_UPI001C9E4AF5	HK97 gp10 family phage protein	NA
UHGV-0043247_11	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-0043247_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043247_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0043247_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0043247_12	UniRef90	UniRef90_UPI0011DCF1F1	phage head closure protein	NA
UHGV-0043247_12	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-0043247_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0043247_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0043247_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043247_13	PHROG	phrog_2550	NA	unknown function
UHGV-0043247_13	UniRef90	UniRef90_UPI0011DDAA29	phage head-tail connector protein	NA
UHGV-0043247_13	eggNOG-mapper	272626.lin2575	NA	NA
UHGV-0043247_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0043247_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0043247_14	PHROG	phrog_933	NA	unknown function
UHGV-0043247_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043247_15	UniRef90	UniRef90_UPI0008DAEAB7	phage major capsid protein	NA
UHGV-0043247_15	eggNOG-mapper	1033744.CAEL01000029_gene1282	phage major capsid protein, HK97 family	NA
UHGV-0043247_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043247_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043247_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0043247_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043247_16	KOfam	K06904	NA	NA
UHGV-0043247_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0043247_16	UniRef90	UniRef90_UPI0011DD24B9	HK97 family phage prohead protease	NA
UHGV-0043247_16	eggNOG-mapper	1033744.CAEL01000029_gene1283	Caudovirus prohead serine protease	NA
UHGV-0043247_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0043247_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0043247_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0043247_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0043247_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043247_17	UniRef90	UniRef90_UPI0011DD76DF	phage portal protein	NA
UHGV-0043247_17	eggNOG-mapper	1033744.CAEL01000029_gene1284	Phage portal protein, HK97 family	NA
UHGV-0043247_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043247_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0043247_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043247_17	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0043247_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043247_18	UniRef90	UniRef90_UPI0011DCFDCC	terminase large subunit	NA
UHGV-0043247_18	eggNOG-mapper	1033744.CAEL01000029_gene1285	Phage Terminase	NA
UHGV-0043247_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043247_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043247_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043247_18	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0043247_19	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0043247_19	UniRef90	UniRef90_UPI0008D9B842	P27 family phage terminase small subunit	NA
UHGV-0043247_19	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0043247_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0043247_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0043247_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0043247_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0043247_20	UniRef90	UniRef90_UPI0011DCE54B	DNA modification methylase	NA
UHGV-0043247_20	eggNOG-mapper	1033744.CAEL01000029_gene1287	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0043247_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0043247_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043247_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0043247_20	COG	COG0863	DNA modification methylase	NA
UHGV-0043247_20	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0043247_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0043247_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043247_21	UniRef90	UniRef90_UPI0011DE5890	HNH endonuclease	NA
UHGV-0043247_21	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0043247_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0043247_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0043247_21	Structural annotation	TIGR02646	NA	NA
UHGV-0043247_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043247_22	UniRef90	UniRef90_UPI0011DCA0B2	NA	NA
UHGV-0043247_22	eggNOG-mapper	1033744.CAEL01000029_gene1288	NA	NA
UHGV-0043247_22	Pfam	PF07374	NA	DUF1492
UHGV-0043247_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0043247_23	eggNOG-mapper	1347392.CCEZ01000005_gene1215	ftsk spoiiie	NA
UHGV-0043247_23	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0043247_24	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043247_24	UniRef90	UniRef90_UPI0011DDF057	VRR-NUC domain-containing protein	NA
UHGV-0043247_24	eggNOG-mapper	1033744.CAEL01000029_gene1290	VRR-NUC domain	NA
UHGV-0043247_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0043247_24	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0043247_25	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0043247_25	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043247_25	UniRef90	UniRef90_UPI0011DCE5EB	ATP-binding protein	NA
UHGV-0043247_25	eggNOG-mapper	1033744.CAEL01000029_gene1291	NA	NA
UHGV-0043247_25	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0043247_25	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0043247_25	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0043247_26	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043247_26	UniRef90	UniRef90_UPI0011DDED0F	DnaD domain protein	NA
UHGV-0043247_26	eggNOG-mapper	1033744.CAEL01000029_gene1292	Transcriptional regulator	NA
UHGV-0043247_26	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0043247_26	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0043247_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0043247_26	Structural annotation	PF09681, NF033788, COG5529	NA	NA
UHGV-0043247_27	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0043247_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0043247_27	UniRef90	UniRef90_UPI0011DD67CD	MBL fold metallo-hydrolase	NA
UHGV-0043247_27	eggNOG-mapper	1033744.CAEL01000029_gene1293	Metallo-beta-lactamase superfamily	NA
UHGV-0043247_27	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0043247_27	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0043247_27	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0043247_31	Structural annotation	PF11305, TIGR02728	NA	NA
UHGV-0043247_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0043247_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043247_32	UniRef90	UniRef90_UPI0011DD15B0	recombinase RecT	NA
UHGV-0043247_32	eggNOG-mapper	1033744.CAEL01000029_gene1294	RecT family	NA
UHGV-0043247_32	Pfam	PF03837	RecT family	RecT
UHGV-0043247_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0043247_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0043247_32	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0043247_34	PHROG	phrog_16126	NA	unknown function
UHGV-0043247_34	UniRef90	UniRef90_F0H2D3	Conserved domain protein	NA
UHGV-0043247_34	eggNOG-mapper	665950.HMPREF1025_01978	NA	NA
UHGV-0043247_36	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0043247_36	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043247_36	UniRef90	UniRef90_UPI0011DC853A	AAA family ATPase	NA
UHGV-0043247_36	eggNOG-mapper	1033744.CAEL01000029_gene1298	nuclear chromosome segregation	NA
UHGV-0043247_36	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-0043247_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0043247_36	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0043247_39	UniRef90	UniRef90_UPI0011DD9B93	helix-turn-helix domain-containing protein	NA
UHGV-0043247_39	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0043247_42	UniRef90	UniRef90_UPI0011DDE4AB	helix-turn-helix domain-containing protein	NA
UHGV-0043247_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0043247_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0043247_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0043247_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0043247_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0043247_43	UniRef90	UniRef90_UPI0011DCBA07	LexA family transcriptional regulator	NA
UHGV-0043247_43	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0043247_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043247_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0043247_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0043247_43	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0043247_44	PHROG	phrog_32721	NA	unknown function
UHGV-0043247_44	UniRef90	UniRef90_X8HUR1	Putative lipoprotein	NA
UHGV-0043247_44	eggNOG-mapper	1033744.CAEL01000029_gene1310	NA	NA
UHGV-0043247_44	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0043247_45	KOfam	K14059	int; integrase	NA
UHGV-0043247_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0043247_45	UniRef90	UniRef90_UPI0011DD4C1D	site-specific integrase	NA
UHGV-0043247_45	eggNOG-mapper	1033744.CAEL01000029_gene1311	Belongs to the 'phage' integrase family	NA
UHGV-0043247_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0043247_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043247_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0043247_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0043247_46	UniRef90	UniRef90_F0GV11	Conserved domain protein	NA
UHGV-0043247_46	eggNOG-mapper	908338.HMPREF9286_0945	NA	NA