UHGV-0043248

Genome information

Genome length 39,000 bps

CDS count 60

Completeness 85.21% (medium-quality)

geNomad score 0.9655

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043248
vOTU ID	vOTU-036966
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4185
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9655
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.28
Jumbo phage	No

Genome content
Genome length	39,000 bps
GC content	33.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.82%
Average CDS length	595.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043248_1	KOfam	K14059	int; integrase	NA
UHGV-0043248_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0043248_1	UniRef90	UniRef90_A0A133PS74	Site-specific recombinase, phage integrase family	NA
UHGV-0043248_1	eggNOG-mapper	875454.BAEW01000002_gene515	Belongs to the 'phage' integrase family	NA
UHGV-0043248_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043248_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043248_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0043248_3	PHROG	phrog_1914	NA	unknown function
UHGV-0043248_3	UniRef90	UniRef90_UPI001E5EAADF	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0043248_3	eggNOG-mapper	875454.BAEW01000002_gene512	NA	NA
UHGV-0043248_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0043248_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0043248_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0043248_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043248_6	UniRef90	UniRef90_A0A379C687	HTH-type transcriptional regulator immR	NA
UHGV-0043248_6	eggNOG-mapper	862517.HMPREF9225_1675	helix-turn-helix	NA
UHGV-0043248_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0043248_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043248_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043248_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043248_8	PHROG	phrog_6297	NA	unknown function
UHGV-0043248_8	UniRef90	UniRef90_A0A133PS63	TIGR02391 family protein	NA
UHGV-0043248_8	eggNOG-mapper	875454.BAEW01000002_gene502	NA	NA
UHGV-0043248_8	Pfam	PF09509	NA	Hypoth_Ymh
UHGV-0043248_8	NCBIFam	TIGR02391.1	TIGR02391 family protein	NA
UHGV-0043248_8	Structural annotation	PF09509, TIGR02391	NA	NA
UHGV-0043248_9	PHROG	phrog_6058	NA	unknown function
UHGV-0043248_9	UniRef90	UniRef90_G4D5J6	Modification methylase SinI	NA
UHGV-0043248_9	eggNOG-mapper	875454.BAEW01000002_gene501	NA	NA
UHGV-0043248_12	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0043248_12	UniRef90	UniRef90_A0A379C806	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0043248_12	eggNOG-mapper	875454.BAEW01000002_gene494	Bacteriophage Mu Gam like protein	NA
UHGV-0043248_12	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0043248_12	Structural annotation	PF07352	NA	NA
UHGV-0043248_13	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043248_13	UniRef90	UniRef90_UPI0011DD3471	phage recombination protein Bet	NA
UHGV-0043248_13	eggNOG-mapper	875454.BAEW01000002_gene493	Phage recombination protein Bet	NA
UHGV-0043248_13	Pfam	PF03837	RecT family	RecT
UHGV-0043248_13	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0043248_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0043248_13	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0043248_14	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043248_14	UniRef90	UniRef90_UPI0016521527	NA	NA
UHGV-0043248_14	eggNOG-mapper	755164.D6PSU3_9CAUD	NA	NA
UHGV-0043248_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0043248_14	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0043248_14	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0043248_14	Structural annotation	PF14297, COG3756	NA	NA
UHGV-0043248_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0043248_15	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043248_15	UniRef90	UniRef90_UPI0011DD99A1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0043248_15	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0043248_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0043248_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0043248_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0043248_16	UniRef90	UniRef90_A0A133PS65	THF_DHG_CYH_C domain-containing protein	NA
UHGV-0043248_16	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0043248_16	Structural annotation	PF02882, MF_01576, NF010772, COG0190	NA	NA
UHGV-0043248_17	PHROG	phrog_25754	NA	unknown function
UHGV-0043248_18	eggNOG-mapper	1118057.CAGX01000020_gene1640	NA	NA
UHGV-0043248_19	PHROG	phrog_715	MazG-like pyrophosphatase	other
UHGV-0043248_19	UniRef90	UniRef90_UPI001F2A2514	MazG-like family protein	NA
UHGV-0043248_19	eggNOG-mapper	1118057.CAGX01000058_gene100	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0043248_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0043248_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043248_20	UniRef90	UniRef90_UPI001009DF1D	RNA polymerase subunit sigma-24	NA
UHGV-0043248_20	eggNOG-mapper	875454.BAEW01000002_gene486	NA	NA
UHGV-0043248_20	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0043248_21	eggNOG-mapper	904314.SEVCU012_1073	NA	NA
UHGV-0043248_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0043248_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0043248_22	UniRef90	UniRef90_UPI0011DD91C3	terminase small subunit	NA
UHGV-0043248_22	eggNOG-mapper	997350.HMPREF9129_1659	terminase, small subunit	NA
UHGV-0043248_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0043248_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0043248_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043248_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0043248_23	UniRef90	UniRef90_UPI0011DCBF2E	PBSX family phage terminase large subunit	NA
UHGV-0043248_23	eggNOG-mapper	862517.HMPREF9225_1653	Terminase RNAseH like domain	NA
UHGV-0043248_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0043248_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0043248_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043248_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043248_23	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0043248_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0043248_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0043248_24	UniRef90	UniRef90_UPI0011DCEF10	phage portal protein	NA
UHGV-0043248_24	eggNOG-mapper	997350.HMPREF9129_1657	phage portal protein, SPP1	NA
UHGV-0043248_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043248_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0043248_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0043248_25	UniRef90	UniRef90_UPI0011DDB5AB	minor capsid protein	NA
UHGV-0043248_25	eggNOG-mapper	1499683.CCFF01000014_gene3913	Phage Mu protein F like protein	NA
UHGV-0043248_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0043248_25	Pfam	PF21814	NA	DUF6883
UHGV-0043248_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0043248_25	COG	COG2369	NA	NA
UHGV-0043248_25	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0043248_26	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0043248_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0043248_27	UniRef90	UniRef90_UPI001896D357	phage scaffolding protein	NA
UHGV-0043248_27	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0043248_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0043248_27	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0043248_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0043248_28	UniRef90	UniRef90_G4D5H4	Lj928 prophage protein	NA
UHGV-0043248_28	eggNOG-mapper	997350.HMPREF9129_1654	NA	NA
UHGV-0043248_28	Structural annotation	MF_04119	NA	NA
UHGV-0043248_30	Structural annotation	PF05135	NA	NA
UHGV-0043248_31	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0043248_31	UniRef90	UniRef90_G4D5H2	NA	NA
UHGV-0043248_31	eggNOG-mapper	862517.HMPREF9225_1645	NA	NA
UHGV-0043248_31	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0043248_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043248_32	UniRef90	UniRef90_UPI00165251B5	HK97 gp10 family phage protein	NA
UHGV-0043248_32	eggNOG-mapper	1118057.CAGX01000020_gene1611	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0043248_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043248_32	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0043248_33	PHROG	phrog_525	NA	unknown function
UHGV-0043248_33	Pfam	PF20765	NA	DUF6838
UHGV-0043248_33	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0043248_34	PHROG	phrog_966	NA	unknown function
UHGV-0043248_35	PHROG	phrog_279	tail sheath	tail
UHGV-0043248_35	UniRef90	UniRef90_UPI0011DCE6C5	phage tail sheath family protein	NA
UHGV-0043248_35	eggNOG-mapper	997350.HMPREF9129_1648	PFAM Phage tail sheath protein	NA
UHGV-0043248_35	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0043248_35	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0043248_35	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0043248_35	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0043248_36	PHROG	phrog_365	tail protein	tail
UHGV-0043248_36	UniRef90	UniRef90_UPI0011DD51A6	phage tail tube protein	NA
UHGV-0043248_36	eggNOG-mapper	997350.HMPREF9129_1647	Phage tail tube protein	NA
UHGV-0043248_36	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0043248_36	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0043248_37	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0043248_37	UniRef90	UniRef90_A0A379C642	Phage XkdN-like protein	NA
UHGV-0043248_37	eggNOG-mapper	875454.BAEW01000002_gene467	XkdN-like protein	NA
UHGV-0043248_37	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0043248_37	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0043248_38	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0043248_38	UniRef90	UniRef90_UPI0011DE0277	tape measure protein	NA
UHGV-0043248_38	eggNOG-mapper	862517.HMPREF9225_1638	tape measure	NA
UHGV-0043248_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0043248_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0043248_38	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0043248_38	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0043248_39	PHROG	phrog_380	endolysin	lysis
UHGV-0043248_39	UniRef90	UniRef90_A0A316TJW2	Peptidoglycan-binding protein LysM	NA
UHGV-0043248_39	eggNOG-mapper	862517.HMPREF9225_1637	positive regulation of growth rate	NA
UHGV-0043248_39	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0043248_39	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0043248_40	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0043248_40	PHROG	phrog_400	tail protein	tail
UHGV-0043248_40	UniRef90	UniRef90_UPI00189952EC	NlpC/P60 family protein	NA
UHGV-0043248_40	eggNOG-mapper	1118057.CAGX01000020_gene1603	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0043248_40	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0043248_40	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0043248_40	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG4379, COG0791	NA	NA
UHGV-0043248_42	PHROG	phrog_120	baseplate protein	tail
UHGV-0043248_42	UniRef90	UniRef90_UPI001E34D7FD	NA	NA
UHGV-0043248_42	eggNOG-mapper	862517.HMPREF9225_1634	NA	NA
UHGV-0043248_42	Pfam	PF10934	NA	DUF2634
UHGV-0043248_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0043248_42	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0043248_43	PHROG	phrog_1608	tail protein	tail
UHGV-0043248_43	UniRef90	UniRef90_UPI001C9E64FF	baseplate J/gp47 family protein	NA
UHGV-0043248_43	eggNOG-mapper	755731.Clo1100_3788	Baseplate J-like protein	NA
UHGV-0043248_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0043248_43	COG	COG3299	NA	NA
UHGV-0043248_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0043248_44	PHROG	phrog_521	tail protein	tail
UHGV-0043248_44	UniRef90	UniRef90_UPI0011DD2DEB	NA	NA
UHGV-0043248_44	eggNOG-mapper	1118057.CAGX01000020_gene1599	NA	NA
UHGV-0043248_44	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0043248_45	PHROG	phrog_15439	peptidase	other
UHGV-0043248_45	UniRef90	UniRef90_UPI0003140BFA	pyocin knob domain-containing protein	NA
UHGV-0043248_45	eggNOG-mapper	875454.BAEW01000002_gene458	tail collar domain protein	NA
UHGV-0043248_45	COG	COG4675	Phage tail collar domain	NA
UHGV-0043248_47	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0043248_47	UniRef90	UniRef90_UPI0011DDC8BE	phage tail protein	NA
UHGV-0043248_47	eggNOG-mapper	875454.BAEW01000002_gene456	tail collar domain protein	NA
UHGV-0043248_47	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0043248_47	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0043248_47	Structural annotation	PF12571	NA	NA
UHGV-0043248_48	PHROG	phrog_36643	NA	unknown function
UHGV-0043248_48	UniRef90	UniRef90_UPI0010430C32	fibronectin type III domain-containing protein	NA
UHGV-0043248_48	eggNOG-mapper	875454.BAEW01000002_gene455	cell wall binding repeat	NA
UHGV-0043248_48	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0043248_50	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0043248_51	eggNOG-mapper	360911.EAT1b_0053	NA	NA
UHGV-0043248_51	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0043248_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0043248_54	PHROG	phrog_670	endolysin	lysis
UHGV-0043248_54	UniRef90	UniRef90_A0A133PSJ1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0043248_54	eggNOG-mapper	875454.BAEW01000002_gene449	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0043248_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0043248_54	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0043248_54	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0043248_55	PHROG	phrog_1129	holin	lysis
UHGV-0043248_55	UniRef90	UniRef90_UPI0004B75A7D	phage holin family protein	NA
UHGV-0043248_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0043248_55	Structural annotation	PF06946	NA	NA
UHGV-0043248_56	PHROG	phrog_6918	holin	lysis
UHGV-0043248_56	UniRef90	UniRef90_A0A133PSG6	Phage holin, LL-H family	NA
UHGV-0043248_56	eggNOG-mapper	875454.BAEW01000002_gene447	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0043248_56	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0043248_57	eggNOG-mapper	1118057.CAGX01000020_gene1589	NA	NA
UHGV-0043248_60	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0043248_60	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0043248_60	UniRef90	UniRef90_A0A2X1XWM5	HicB-like domain-containing protein	NA
UHGV-0043248_60	eggNOG-mapper	1321784.HMPREF1987_01065	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0043248_60	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0043248_60	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0043248_60	Structural annotation	PF15919, COG1598	NA	NA