UHGV-0043263

Genome information

vOTU vOTU-020952

Genome length 26,545 bps

CDS count 32

Completeness 58.85% (medium-quality)

geNomad score 0.9669

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043263
vOTU ID	vOTU-020952
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5577
BioSample	SAMEA728667
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9669
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.38
Jumbo phage	No

Genome content
Genome length	26,545 bps
GC content	39.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	94.39%
Average CDS length	785.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043263_2	PHROG	phrog_12796	tail fiber protein	tail
UHGV-0043263_2	eggNOG-mapper	556269.ACDQ01000006_gene1706	Phage Tail Collar Domain	NA
UHGV-0043263_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0043263_3	PHROG	phrog_587	structural protein	head and packaging
UHGV-0043263_3	UniRef90	UniRef90_A0A2P5GVD7	NA	NA
UHGV-0043263_3	eggNOG-mapper	1124991.MU9_1893	NA	NA
UHGV-0043263_3	Pfam	PF11041	NA	DUF2612
UHGV-0043263_3	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0043263_4	PHROG	phrog_6	baseplate protein	tail
UHGV-0043263_4	UniRef90	UniRef90_UPI000CCC09B7	baseplate J/gp47 family protein	NA
UHGV-0043263_4	eggNOG-mapper	500637.PROVRUST_06714	Baseplate J-like protein	NA
UHGV-0043263_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0043263_4	COG	COG3299	NA	NA
UHGV-0043263_4	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0043263_5	PHROG	phrog_120	baseplate protein	tail
UHGV-0043263_5	eggNOG-mapper	585.DR95_1278	NA	NA
UHGV-0043263_5	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0043263_6	PHROG	phrog_20516	NA	unknown function
UHGV-0043263_6	UniRef90	UniRef90_A0A6J5LEU3	Gp138_N domain-containing protein	NA
UHGV-0043263_6	eggNOG-mapper	477184.KYC_12778	Baseplate assembly protein	NA
UHGV-0043263_6	Pfam	PF18352	NA	Gp138_N
UHGV-0043263_6	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0043263_6	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0043263_6	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0043263_7	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0043263_7	eggNOG-mapper	882378.RBRH_01196	NA	NA
UHGV-0043263_7	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0043263_8	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0043263_8	eggNOG-mapper	882378.RBRH_01197	NA	NA
UHGV-0043263_9	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0043263_9	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043263_9	UniRef90	UniRef90_A0A1F6S8I9	HSDR_N_2 domain-containing protein	NA
UHGV-0043263_9	eggNOG-mapper	1321820.HMPREF1983_00959	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0043263_9	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0043263_9	COG	COG4748	NA	NA
UHGV-0043263_9	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0043263_10	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-0043263_11	eggNOG-mapper	882378.RBRH_01198	NA	NA
UHGV-0043263_11	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0043263_12	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0043263_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0043263_12	Structural annotation	TIGR01760	NA	NA
UHGV-0043263_13	UniRef90	UniRef90_Q6IWV4	Gp15 E	NA
UHGV-0043263_13	eggNOG-mapper	1124991.MU9_1885	NA	NA
UHGV-0043263_14	PHROG	phrog_2420	tail fiber protein	tail
UHGV-0043263_14	UniRef90	UniRef90_Q2L2V6	Putative phage protein	NA
UHGV-0043263_14	eggNOG-mapper	360910.BAV1326	NA	NA
UHGV-0043263_14	Structural annotation	PF11681, TIGR01603, COG5437	NA	NA
UHGV-0043263_15	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0043263_15	UniRef90	UniRef90_A0A2Z3I1Q4	NA	NA
UHGV-0043263_15	eggNOG-mapper	882378.RBRH_01202	NA	NA
UHGV-0043263_15	Pfam	PF11863	NA	DUF3383
UHGV-0043263_15	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0043263_16	PHROG	phrog_4414	NA	unknown function
UHGV-0043263_16	Structural annotation	PF09646	NA	NA
UHGV-0043263_17	PHROG	phrog_4475	head protein	head and packaging
UHGV-0043263_17	UniRef90	UniRef90_A0A225DMF8	NA	NA
UHGV-0043263_17	eggNOG-mapper	1204521.I7A8K9_9CAUD	NA	NA
UHGV-0043263_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0043263_18	PHROG	phrog_222	tail protein	tail
UHGV-0043263_18	UniRef90	UniRef90_Q2L2W0	NA	NA
UHGV-0043263_18	eggNOG-mapper	669262.COK_0668	NA	NA
UHGV-0043263_19	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0043263_19	UniRef90	UniRef90_UPI001CBBFB65	NA	NA
UHGV-0043263_19	eggNOG-mapper	882378.RBRH_01206	NA	NA
UHGV-0043263_19	Pfam	PF13262	NA	DUF4054
UHGV-0043263_19	Structural annotation	PF13262	NA	NA
UHGV-0043263_20	PHROG	phrog_3714	NA	unknown function
UHGV-0043263_20	eggNOG-mapper	669262.COK_0670	NA	NA
UHGV-0043263_22	PHROG	phrog_264	major head protein	head and packaging
UHGV-0043263_22	UniRef90	UniRef90_UPI00036421A8	NA	NA
UHGV-0043263_22	eggNOG-mapper	882378.RBRH_01208	Protein conserved in bacteria	NA
UHGV-0043263_22	Pfam	PF09950	NA	DUF2184
UHGV-0043263_22	COG	COG4834	NA	NA
UHGV-0043263_22	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0043263_23	PHROG	phrog_3645	virion structural protein	head and packaging
UHGV-0043263_23	eggNOG-mapper	882378.RBRH_01209	NA	NA
UHGV-0043263_23	Structural annotation	COG5471	NA	NA
UHGV-0043263_24	KOfam	K09960	NA	NA
UHGV-0043263_24	PHROG	phrog_3778	head maturation protease	head and packaging
UHGV-0043263_24	UniRef90	UniRef90_A0A562X740	NA	NA
UHGV-0043263_24	eggNOG-mapper	360910.BAV1317	NA	NA
UHGV-0043263_24	Pfam	PF09979	NA	DUF2213
UHGV-0043263_24	COG	COG3566	NA	NA
UHGV-0043263_24	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0043263_25	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0043263_25	UniRef90	UniRef90_UPI000DA3A78B	phage head morphogenesis protein	NA
UHGV-0043263_25	eggNOG-mapper	520999.PROVALCAL_03428	Phage Mu protein F like protein	NA
UHGV-0043263_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0043263_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0043263_25	COG	COG2369	NA	NA
UHGV-0043263_25	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0043263_27	KOfam	K09961	NA	NA
UHGV-0043263_27	PHROG	phrog_4660	minor head protein	head and packaging
UHGV-0043263_27	UniRef90	UniRef90_A0A225DLD5	Phage-related protein	NA
UHGV-0043263_27	eggNOG-mapper	882378.RBRH_01212	NA	NA
UHGV-0043263_27	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0043263_27	COG	COG3567	NA	NA
UHGV-0043263_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043263_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0043263_28	UniRef90	UniRef90_A0A1H3F9U6	Phage terminase, large subunit, PBSX family	NA
UHGV-0043263_28	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0043263_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0043263_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0043263_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043263_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043263_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0043263_29	PHROG	phrog_2412	NA	unknown function
UHGV-0043263_29	eggNOG-mapper	665942.HMPREF1022_00138	NA	NA
UHGV-0043263_31	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0043263_31	Structural annotation	PF00210, MF_01441, NF006975, COG0783	NA	NA