UHGV-0043282

Genome information

Genome length 40,141 bps

CDS count 52

Completeness 71.25% (medium-quality)

geNomad score 0.9620

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043282
vOTU ID	vOTU-024935
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_18269
BioSample	SAMEA2042740
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9620
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.52
Jumbo phage	No

Genome content
Genome length	40,141 bps
GC content	38.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.68%
Average CDS length	719.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043282_1	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043282_1	eggNOG-mapper	1122992.CBQQ010000072_gene1965	NA	NA
UHGV-0043282_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0043282_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043282_2	UniRef90	UniRef90_A0A840CYF7	DNA replication protein DnaC	NA
UHGV-0043282_2	eggNOG-mapper	1168034.FH5T_18075	DNA-dependent DNA replication	NA
UHGV-0043282_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0043282_4	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0043282_4	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0043282_5	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0043282_5	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0043282_5	UniRef90	UniRef90_UPI000D8D5A98	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0043282_5	eggNOG-mapper	357276.EL88_11445	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0043282_5	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0043282_5	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0043282_5	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0043282_5	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0043282_7	PHROG	phrog_874	NA	unknown function
UHGV-0043282_7	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0043282_7	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0043282_10	UniRef90	UniRef90_UPI000481D884	NA	NA
UHGV-0043282_11	PHROG	phrog_3364	NA	unknown function
UHGV-0043282_11	UniRef90	UniRef90_UPI00035F0106	sensor histidine kinase	NA
UHGV-0043282_11	eggNOG-mapper	1123057.P872_14535	NA	NA
UHGV-0043282_11	Structural annotation	PF02518, MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0043282_12	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0043282_12	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0043282_13	PHROG	phrog_38431	NA	unknown function
UHGV-0043282_13	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0043282_13	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0043282_17	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0043282_18	UniRef90	UniRef90_A0A2D0A621	PEGA domain-containing protein	NA
UHGV-0043282_18	eggNOG-mapper	1121097.JCM15093_3531	NA	NA
UHGV-0043282_19	Structural annotation	PF19666	NA	NA
UHGV-0043282_22	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0043282_23	PHROG	phrog_1501	NA	unknown function
UHGV-0043282_23	UniRef90	UniRef90_UPI001896FE83	NA	NA
UHGV-0043282_23	eggNOG-mapper	1121097.JCM15093_2704	NA	NA
UHGV-0043282_23	Pfam	PF18925	NA	DUF5675
UHGV-0043282_23	Structural annotation	PF18925	NA	NA
UHGV-0043282_24	UniRef90	UniRef90_A0A849XL62	Phage holin family protein	NA
UHGV-0043282_24	eggNOG-mapper	1347393.HG726026_gene2534	NA	NA
UHGV-0043282_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0043282_24	Structural annotation	PF05105, COG4824	NA	NA
UHGV-0043282_25	PHROG	phrog_3108	NA	unknown function
UHGV-0043282_25	eggNOG-mapper	1123366.TH3_19867	lytic transglycosylase activity	NA
UHGV-0043282_25	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0043282_28	PHROG	phrog_17422	NA	unknown function
UHGV-0043282_28	UniRef90	UniRef90_UPI000D873A09	polymer-forming cytoskeletal protein	NA
UHGV-0043282_28	eggNOG-mapper	762903.Pedsa_0939	Phage minor structural protein	NA
UHGV-0043282_28	COG	COG4926	Phage-related protein	NA
UHGV-0043282_29	eggNOG-mapper	1347393.HG726031_gene3982	Pectate lyase	NA
UHGV-0043282_29	COG	COG3866	Pectate lyase	NA
UHGV-0043282_29	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0043282_30	KOfam	K07496	K07496; putative transposase	NA
UHGV-0043282_30	PHROG	phrog_506	transposase	integration and excision
UHGV-0043282_30	UniRef90	UniRef90_U2J6P5	Transposase, IS605 OrfB family	NA
UHGV-0043282_30	eggNOG-mapper	1227276.HMPREF9148_01728	Putative transposase DNA-binding domain	NA
UHGV-0043282_30	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0043282_30	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0043282_30	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0043282_30	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0043282_30	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0043282_30	COG	COG0675	Transposase	NA
UHGV-0043282_30	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0043282_31	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0043282_31	PHROG	phrog_2577	transposase	integration and excision
UHGV-0043282_31	UniRef90	UniRef90_UPI001C378B70	IS200/IS605 family transposase	NA
UHGV-0043282_31	eggNOG-mapper	1121267.JHZL01000010_gene376	COG1943 Transposase and inactivated derivatives	NA
UHGV-0043282_31	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0043282_31	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0043282_31	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0043282_31	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0043282_32	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0043282_32	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0043282_32	UniRef90	UniRef90_UPI000E4914F2	tape measure protein	NA
UHGV-0043282_32	eggNOG-mapper	411901.BACCAC_01134	NA	NA
UHGV-0043282_32	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0043282_32	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0043282_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0043282_32	Structural annotation	PF20155, PF16535, TIGR01760, COG3941	NA	NA
UHGV-0043282_33	Structural annotation	PF20336, TIGR01674	NA	NA
UHGV-0043282_34	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0043282_35	PHROG	phrog_5597	NA	unknown function
UHGV-0043282_35	Structural annotation	PF05657	NA	NA
UHGV-0043282_36	PHROG	phrog_5377	NA	unknown function
UHGV-0043282_36	UniRef90	UniRef90_A0A838ZA84	HK97 gp10 family phage protein	NA
UHGV-0043282_36	eggNOG-mapper	886379.AEWI01000001_gene1734	NA	NA
UHGV-0043282_38	PHROG	phrog_7935	NA	unknown function
UHGV-0043282_38	eggNOG-mapper	457424.BFAG_02426	NA	NA
UHGV-0043282_38	Pfam	PF20449	NA	DUF6706
UHGV-0043282_38	Structural annotation	PF20449	NA	NA
UHGV-0043282_39	PHROG	phrog_16445	NA	unknown function
UHGV-0043282_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-0043282_40	UniRef90	UniRef90_A0A8D9UHX5	Major capsid protein E	NA
UHGV-0043282_40	eggNOG-mapper	1268240.ATFI01000008_gene2587	Phage major capsid protein E	NA
UHGV-0043282_40	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0043282_41	PHROG	phrog_38330	NA	unknown function
UHGV-0043282_41	eggNOG-mapper	1268240.ATFI01000008_gene2586	NA	NA
UHGV-0043282_41	Structural annotation	PF02924	NA	NA
UHGV-0043282_42	PHROG	phrog_5824	NA	unknown function
UHGV-0043282_42	eggNOG-mapper	762968.HMPREF9441_00579	NA	NA
UHGV-0043282_43	PHROG	phrog_35295	NA	unknown function
UHGV-0043282_43	UniRef90	UniRef90_A0A139LH69	Gln_amidase domain-containing protein	NA
UHGV-0043282_43	eggNOG-mapper	457424.BFAG_02418	cell adhesion	NA
UHGV-0043282_43	COG	COG2369	NA	NA
UHGV-0043282_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0043282_44	UniRef90	UniRef90_A0A412WEY4	Phage portal protein	NA
UHGV-0043282_44	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0043282_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043282_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0043282_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043282_45	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0043282_45	UniRef90	UniRef90_A0A412WF06	PBSX family phage terminase large subunit	NA
UHGV-0043282_45	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0043282_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0043282_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0043282_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043282_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043282_45	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0043282_46	PHROG	phrog_15125	NA	unknown function
UHGV-0043282_46	UniRef90	UniRef90_F3QSL2	Conserved domain protein	NA
UHGV-0043282_46	eggNOG-mapper	1268240.ATFI01000008_gene2580	NA	NA
UHGV-0043282_48	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0043282_48	UniRef90	UniRef90_A0A412WEY3	NA	NA
UHGV-0043282_48	eggNOG-mapper	762968.HMPREF9441_00586	NA	NA
UHGV-0043282_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043282_48	Pfam	PF14386	NA	DUF4417
UHGV-0043282_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0043282_48	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0043282_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0043282_52	UniRef90	UniRef90_A0A412WF03	Phage_int_SAM_5 domain-containing protein	NA
UHGV-0043282_52	eggNOG-mapper	457424.BFAG_02375	Belongs to the 'phage' integrase family	NA
UHGV-0043282_52	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0043282_52	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0043282_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043282_52	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA