UHGV-0043376

Genome information

Genome length 37,976 bps

CDS count 62

Completeness 97.03% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043376
vOTU ID	vOTU-062344
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3913
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	34
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	88.45
Jumbo phage	No

Genome content
Genome length	37,976 bps
GC content	36.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.99%
Average CDS length	574.07 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043376_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0043376_1	PHROG	phrog_291	endolysin	lysis
UHGV-0043376_1	UniRef90	UniRef90_UPI000C99E621	lysin	NA
UHGV-0043376_1	eggNOG-mapper	257314.LJ_1418	Glycosyl hydrolases family 25	NA
UHGV-0043376_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0043376_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0043376_1	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0043376_2	PHROG	phrog_10813	holin	lysis
UHGV-0043376_2	UniRef90	UniRef90_UPI000C9CF389	phage holin	NA
UHGV-0043376_2	eggNOG-mapper	324831.LGAS_0631	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0043376_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0043376_2	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0043376_2	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0043376_3	PHROG	phrog_6664	NA	unknown function
UHGV-0043376_3	eggNOG-mapper	324831.LGAS_0630	NA	NA
UHGV-0043376_4	PHROG	phrog_4325	holin	lysis
UHGV-0043376_4	eggNOG-mapper	139871.Q9AZ83_9VIRU	NA	NA
UHGV-0043376_5	PHROG	phrog_134	NA	unknown function
UHGV-0043376_5	UniRef90	UniRef90_UPI001BFF02DB	XkdX family protein	NA
UHGV-0043376_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0043376_6	PHROG	phrog_8791	NA	unknown function
UHGV-0043376_6	eggNOG-mapper	1416334.X2CXE7_9CAUD	NA	NA
UHGV-0043376_7	PHROG	phrog_12519	NA	unknown function
UHGV-0043376_7	UniRef90	UniRef90_A0A889IMG4	BppU_N domain-containing protein	NA
UHGV-0043376_7	eggNOG-mapper	363555.Q20DB8_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0043376_7	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0043376_8	PHROG	phrog_521	tail protein	tail
UHGV-0043376_8	UniRef90	UniRef90_UPI000EFAB554	NA	NA
UHGV-0043376_8	eggNOG-mapper	363555.Q20DB9_9CAUD	NA	NA
UHGV-0043376_8	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0043376_8	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0043376_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0043376_9	UniRef90	UniRef90_Q20DC0	Putative tail protein	NA
UHGV-0043376_9	eggNOG-mapper	1416334.X2CYG4_9CAUD	Baseplate J-like protein	NA
UHGV-0043376_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0043376_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0043376_10	PHROG	phrog_120	baseplate protein	tail
UHGV-0043376_10	UniRef90	UniRef90_A0A318M7G5	NA	NA
UHGV-0043376_10	eggNOG-mapper	324831.LGAS_0623	NA	NA
UHGV-0043376_10	Pfam	PF10934	NA	DUF2634
UHGV-0043376_10	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0043376_10	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0043376_11	PHROG	phrog_579	NA	unknown function
UHGV-0043376_11	UniRef90	UniRef90_A0A3M0NNM1	NA	NA
UHGV-0043376_11	eggNOG-mapper	324831.LGAS_0622	NA	NA
UHGV-0043376_11	Pfam	PF10844	NA	DUF2577
UHGV-0043376_11	Structural annotation	PF10844, MF_00085, TIGR00008, COG0361	NA	NA
UHGV-0043376_12	PHROG	phrog_400	tail protein	tail
UHGV-0043376_12	UniRef90	UniRef90_A0A3M0NRD4	Late control protein D	NA
UHGV-0043376_12	eggNOG-mapper	363555.Q20DC3_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0043376_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0043376_13	PHROG	phrog_380	endolysin	lysis
UHGV-0043376_13	UniRef90	UniRef90_I7L9W4	Putative LysM-like protein	NA
UHGV-0043376_13	eggNOG-mapper	324831.LGAS_0620	protein containing LysM domain	NA
UHGV-0043376_13	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0043376_13	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0043376_14	PHROG	phrog_1204	tail protein	tail
UHGV-0043376_14	UniRef90	UniRef90_Q20DC5	Putative minor tail protein	NA
UHGV-0043376_14	eggNOG-mapper	324831.LGAS_0619	phage tail tape measure protein	NA
UHGV-0043376_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0043376_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0043376_14	COG	COG5412	Phage-related protein	NA
UHGV-0043376_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0043376_15	UniRef90	UniRef90_L0P6Y3	Phage XkdN-like protein	NA
UHGV-0043376_15	eggNOG-mapper	139871.A9D9V7_9VIRU	Pfam:Phage_TAC_5	NA
UHGV-0043376_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0043376_15	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0043376_16	PHROG	phrog_365	tail protein	tail
UHGV-0043376_16	UniRef90	UniRef90_Q20DC7	Putative phage core tail protein	NA
UHGV-0043376_16	eggNOG-mapper	324831.LGAS_0617	Phage tail tube protein	NA
UHGV-0043376_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0043376_16	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0043376_17	PHROG	phrog_279	tail sheath	tail
UHGV-0043376_17	UniRef90	UniRef90_Q20DC8	Putative phage sheath tail protein	NA
UHGV-0043376_17	eggNOG-mapper	324831.LGAS_0616	Phage tail sheath C-terminal domain	NA
UHGV-0043376_17	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0043376_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0043376_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0043376_17	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0043376_18	PHROG	phrog_966	NA	unknown function
UHGV-0043376_18	eggNOG-mapper	324831.LGAS_0615	NA	NA
UHGV-0043376_19	PHROG	phrog_525	NA	unknown function
UHGV-0043376_19	eggNOG-mapper	324831.LGAS_0614	NA	NA
UHGV-0043376_19	Pfam	PF20765	NA	DUF6838
UHGV-0043376_19	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0043376_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043376_20	UniRef90	UniRef90_A0A346MRJ2	HK97 gp10 family phage protein	NA
UHGV-0043376_20	eggNOG-mapper	324831.LGAS_0613	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0043376_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043376_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0043376_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0043376_21	UniRef90	UniRef90_M5AG47	Phage Related protein	NA
UHGV-0043376_21	eggNOG-mapper	324831.LGAS_0612	NA	NA
UHGV-0043376_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0043376_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0043376_22	eggNOG-mapper	324831.LGAS_0611	NA	NA
UHGV-0043376_22	Structural annotation	PF05135	NA	NA
UHGV-0043376_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0043376_23	UniRef90	UniRef90_A0A805YZM3	Major capsid protein	NA
UHGV-0043376_23	eggNOG-mapper	324831.LGAS_0610	NA	NA
UHGV-0043376_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043376_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0043376_24	UniRef90	UniRef90_A0A805YYD5	Phage minor structural protein GP20	NA
UHGV-0043376_24	eggNOG-mapper	324831.LGAS_0609	Phage minor structural protein GP20	NA
UHGV-0043376_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0043376_24	Structural annotation	PF06810	NA	NA
UHGV-0043376_25	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0043376_25	UniRef90	UniRef90_A0A833FL27	Phage head morphogenesis protein	NA
UHGV-0043376_25	eggNOG-mapper	363555.Q20DD6_9CAUD	Phage Mu protein F like protein	NA
UHGV-0043376_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0043376_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0043376_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0043376_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0043376_26	UniRef90	UniRef90_A0A8F5HZY5	Phage portal protein	NA
UHGV-0043376_26	eggNOG-mapper	363555.Q20DD7_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0043376_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043376_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0043376_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043376_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0043376_27	UniRef90	UniRef90_A0A833CFP8	PBSX family phage terminase large subunit	NA
UHGV-0043376_27	eggNOG-mapper	363555.Q20DD8_9CAUD	DNA packaging	NA
UHGV-0043376_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0043376_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043376_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0043376_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0043376_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0043376_28	UniRef90	UniRef90_Q20DD9	Putative phage terminase small subunit	NA
UHGV-0043376_28	eggNOG-mapper	363555.Q20DD9_9CAUD	Terminase small subunit	NA
UHGV-0043376_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0043376_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0043376_29	eggNOG-mapper	697281.Mahau_0079	NA	NA
UHGV-0043376_30	eggNOG-mapper	315730.BcerKBAB4_3436	NA	NA
UHGV-0043376_30	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-0043376_31	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0043376_31	UniRef90	UniRef90_E1NPJ8	Phage transcriptional regulator, ArpU family	NA
UHGV-0043376_31	eggNOG-mapper	363555.Q20DE6_9CAUD	NA	NA
UHGV-0043376_31	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0043376_32	PHROG	phrog_22933	NA	unknown function
UHGV-0043376_32	eggNOG-mapper	324831.LGAS_0596	NA	NA
UHGV-0043376_33	PHROG	phrog_17520	NA	unknown function
UHGV-0043376_33	eggNOG-mapper	139871.A9D9Q3_9VIRU	NA	NA
UHGV-0043376_34	PHROG	phrog_16953	NA	unknown function
UHGV-0043376_34	eggNOG-mapper	363555.Q20DE9_9CAUD	NA	NA
UHGV-0043376_35	PHROG	phrog_25157	NA	unknown function
UHGV-0043376_36	PHROG	phrog_33595	NA	unknown function
UHGV-0043376_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0043376_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043376_38	UniRef90	UniRef90_Q20DF1	Putative holiday junction resolvase	NA
UHGV-0043376_38	eggNOG-mapper	324831.LGAS_0591	Endodeoxyribonuclease RusA	NA
UHGV-0043376_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0043376_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0043376_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0043376_39	PHROG	phrog_20706	NA	unknown function
UHGV-0043376_40	PHROG	phrog_834	NA	unknown function
UHGV-0043376_40	eggNOG-mapper	139871.A9D9N8_9VIRU	NA	NA
UHGV-0043376_41	PHROG	phrog_1997	NA	unknown function
UHGV-0043376_42	PHROG	phrog_7070	NA	unknown function
UHGV-0043376_42	eggNOG-mapper	221915.Q6Y7K5_BPPGK	NA	NA
UHGV-0043376_43	PHROG	phrog_22112	NA	unknown function
UHGV-0043376_43	eggNOG-mapper	139871.A9D9N5_9VIRU	NA	NA
UHGV-0043376_44	PHROG	phrog_22711	NA	unknown function
UHGV-0043376_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0043376_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0043376_45	UniRef90	UniRef90_A9D9L9	Anti-repressor	NA
UHGV-0043376_45	eggNOG-mapper	139871.A9D9L9_9VIRU	DNA binding	NA
UHGV-0043376_45	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0043376_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0043376_45	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0043376_46	PHROG	phrog_35711	NA	unknown function
UHGV-0043376_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0043376_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043376_47	UniRef90	UniRef90_A0A2M9WKK6	XRE family transcriptional regulator (Fragment)	NA
UHGV-0043376_47	eggNOG-mapper	363555.Q20DG0_9CAUD	sequence-specific DNA binding	NA
UHGV-0043376_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0043376_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043376_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043376_48	PHROG	phrog_1163	NA	unknown function
UHGV-0043376_48	UniRef90	UniRef90_A0A1V3Y015	DNA replication protein	NA
UHGV-0043376_48	eggNOG-mapper	139871.A9D9L3_9VIRU	calcium ion binding	NA
UHGV-0043376_48	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0043376_48	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0043376_49	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043376_49	UniRef90	UniRef90_A0A833CFF3	ERF family protein	NA
UHGV-0043376_49	eggNOG-mapper	363555.Q20DG2_9CAUD	NA	NA
UHGV-0043376_49	Pfam	PF04404	ERF superfamily	ERF
UHGV-0043376_49	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0043376_50	PHROG	phrog_7634	NA	unknown function
UHGV-0043376_51	PHROG	phrog_16169	NA	unknown function
UHGV-0043376_51	eggNOG-mapper	363555.Q20DG4_9CAUD	NA	NA
UHGV-0043376_52	PHROG	phrog_15265	recombinase	other
UHGV-0043376_52	UniRef90	UniRef90_Q65PN7	Lj928 prophage recombination protein	NA
UHGV-0043376_52	eggNOG-mapper	324831.LGAS_0579	NA	NA
UHGV-0043376_55	PHROG	phrog_18877	NA	unknown function
UHGV-0043376_56	PHROG	phrog_823	NA	unknown function
UHGV-0043376_56	UniRef90	UniRef90_UPI0001A4339F	NA	NA
UHGV-0043376_56	eggNOG-mapper	324831.LGAS_0577	NA	NA
UHGV-0043376_56	Pfam	PF05595	NA	DUF771
UHGV-0043376_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043376_57	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0043376_57	UniRef90	UniRef90_A0A805YTF4	Transcriptional regulator, xre family	NA
UHGV-0043376_57	eggNOG-mapper	891391.LAC30SC_06700	Helix-turn-helix domain	NA
UHGV-0043376_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043376_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043376_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0043376_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043376_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043376_58	UniRef90	UniRef90_A0A1V3XZX4	Transcriptional regulator	NA
UHGV-0043376_58	eggNOG-mapper	324831.LGAS_0575	Helix-turn-helix domain	NA
UHGV-0043376_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0043376_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043376_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043376_58	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043376_59	PHROG	phrog_87	metallo-protease	other
UHGV-0043376_59	UniRef90	UniRef90_A0A805ZGE0	Peptidase_M78 domain-containing protein	NA
UHGV-0043376_59	eggNOG-mapper	1416334.X2CXW8_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0043376_59	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0043376_59	Structural annotation	PF13058, MF_00745, COG2856	NA	NA
UHGV-0043376_60	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0043376_60	UniRef90	UniRef90_UPI000B99A1E4	NA	NA
UHGV-0043376_60	eggNOG-mapper	139871.A9D9J1_9VIRU	NA	NA
UHGV-0043376_60	Pfam	PF12978	NA	DUF3862
UHGV-0043376_60	Structural annotation	PF12978	NA	NA
UHGV-0043376_61	PHROG	phrog_31322	NA	unknown function
UHGV-0043376_62	KOfam	K14059	int; integrase	NA
UHGV-0043376_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0043376_62	UniRef90	UniRef90_UPI000C9B7183	site-specific integrase	NA
UHGV-0043376_62	eggNOG-mapper	1416334.X2CYE9_9CAUD	Phage integrase family	NA
UHGV-0043376_62	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0043376_62	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0043376_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043376_62	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA