UHGV-0043541

Genome information

Genome length 35,990 bps

CDS count 58

Completeness 94.34% (high-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043541
vOTU ID	vOTU-080424
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2309
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	39
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	87.5
Jumbo phage	No

Genome content
Genome length	35,990 bps
GC content	40.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.92%
Average CDS length	579.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043541_1	PHROG	phrog_4964	NA	unknown function
UHGV-0043541_1	UniRef90	UniRef90_A0A3A5Q8M2	Elongation factor G	NA
UHGV-0043541_2	PHROG	phrog_12732	NA	unknown function
UHGV-0043541_3	PHROG	phrog_21909	NA	unknown function
UHGV-0043541_3	UniRef90	UniRef90_A0A4D6B362	Tail fiber protein	NA
UHGV-0043541_3	eggNOG-mapper	999425.HMPREF9186_02055	NA	NA
UHGV-0043541_4	PHROG	phrog_4757	NA	unknown function
UHGV-0043541_5	PHROG	phrog_6487	NA	unknown function
UHGV-0043541_5	UniRef90	UniRef90_A0A0U0KNR2	NA	NA
UHGV-0043541_5	eggNOG-mapper	999425.HMPREF9186_02053	NA	NA
UHGV-0043541_5	Structural annotation	PF10651, NF041178, COG5456	NA	NA
UHGV-0043541_6	PHROG	phrog_1309	endolysin	lysis
UHGV-0043541_6	UniRef90	UniRef90_A0A3A5PYU9	CHAP domain-containing protein	NA
UHGV-0043541_6	eggNOG-mapper	1316408.HSISM1_1251	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0043541_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0043541_6	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0043541_6	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0043541_6	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-0043541_7	PHROG	phrog_33625	holin	lysis
UHGV-0043541_7	UniRef90	UniRef90_A0A3A5PZQ5	Phage holin	NA
UHGV-0043541_7	eggNOG-mapper	1297534.CAUJ01000005_gene166	Holin, phage phi LC3 family	NA
UHGV-0043541_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0043541_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0043541_7	COG	COG5546	NA	NA
UHGV-0043541_7	Structural annotation	COG5546	NA	NA
UHGV-0043541_8	PHROG	phrog_4257	NA	unknown function
UHGV-0043541_8	UniRef90	UniRef90_A0A1L2JYP2	Transcription termination factor	NA
UHGV-0043541_8	eggNOG-mapper	997830.HMPREF1124_0612	NA	NA
UHGV-0043541_9	PHROG	phrog_1554	NA	unknown function
UHGV-0043541_9	UniRef90	UniRef90_A0A4V0EM35	NA	NA
UHGV-0043541_9	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0043541_9	Structural annotation	PF07104	NA	NA
UHGV-0043541_10	UniRef90	UniRef90_F5W039	Conserved domain protein	NA
UHGV-0043541_11	PHROG	phrog_2270	NA	unknown function
UHGV-0043541_11	UniRef90	UniRef90_UPI001BDA438C	gp58-like family protein	NA
UHGV-0043541_11	eggNOG-mapper	537874.B3GW15_9CAUD	peptidoglycan catabolic process	NA
UHGV-0043541_11	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0043541_11	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0043541_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043541_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043541_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043541_12	UniRef90	UniRef90_A0A3A5PYH7	Phage tail protein	NA
UHGV-0043541_12	eggNOG-mapper	537874.B3GW14_9CAUD	Phage tail protein	NA
UHGV-0043541_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0043541_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0043541_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0043541_13	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0043541_13	UniRef90	UniRef90_A0A3A5Q505	TMP_3 domain-containing protein	NA
UHGV-0043541_13	eggNOG-mapper	537874.B3GW13_9CAUD	NA	NA
UHGV-0043541_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0043541_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0043541_13	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-0043541_14	PHROG	phrog_706	NA	unknown function
UHGV-0043541_14	UniRef90	UniRef90_UPI001CBECD66	bacteriophage Gp15 family protein	NA
UHGV-0043541_14	eggNOG-mapper	537874.B3GW12_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0043541_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0043541_14	Structural annotation	PF06854	NA	NA
UHGV-0043541_15	PHROG	phrog_1061	NA	unknown function
UHGV-0043541_15	UniRef90	UniRef90_A0A061P453	NA	NA
UHGV-0043541_15	eggNOG-mapper	537874.B3GW11_9CAUD	NA	NA
UHGV-0043541_15	Structural annotation	PF10666	NA	NA
UHGV-0043541_16	PHROG	phrog_820	major tail protein	tail
UHGV-0043541_16	UniRef90	UniRef90_A0A3A5PYV9	Phage tail protein	NA
UHGV-0043541_16	eggNOG-mapper	537874.B3GW10_9CAUD	NA	NA
UHGV-0043541_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0043541_17	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0043541_17	UniRef90	UniRef90_A0A3A5PZR6	Capsid protein	NA
UHGV-0043541_17	eggNOG-mapper	1121871.AUAT01000035_gene1282	Minor capsid protein from bacteriophage	NA
UHGV-0043541_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0043541_17	Structural annotation	PF12691	NA	NA
UHGV-0043541_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0043541_18	UniRef90	UniRef90_A0A3A5Q0W5	Capsid protein	NA
UHGV-0043541_18	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-0043541_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0043541_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0043541_19	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0043541_19	UniRef90	UniRef90_A0A3A5QD68	Minor capsid protein	NA
UHGV-0043541_19	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0043541_19	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0043541_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0043541_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0043541_20	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-0043541_20	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-0043541_21	PHROG	phrog_2910	NA	unknown function
UHGV-0043541_21	UniRef90	UniRef90_F9PZ37	Conserved domain protein	NA
UHGV-0043541_22	PHROG	phrog_840	major head protein	head and packaging
UHGV-0043541_22	UniRef90	UniRef90_A0A1F0A5G0	Capsid protein	NA
UHGV-0043541_22	eggNOG-mapper	226185.EF_0339	NA	NA
UHGV-0043541_22	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0043541_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0043541_23	UniRef90	UniRef90_A0A3A5Q519	Scaffolding protein	NA
UHGV-0043541_23	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0043541_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0043541_23	Structural annotation	PF06810	NA	NA
UHGV-0043541_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0043541_25	UniRef90	UniRef90_A0A3A5PYL0	Capsid protein	NA
UHGV-0043541_25	eggNOG-mapper	764291.STRUR_2106	Phage minor capsid protein 2	NA
UHGV-0043541_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0043541_25	COG	COG2369	NA	NA
UHGV-0043541_25	Structural annotation	PF06152	NA	NA
UHGV-0043541_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0043541_26	UniRef90	UniRef90_A0A3A5Q6T0	Phage portal protein	NA
UHGV-0043541_26	eggNOG-mapper	764291.STRUR_2107	portal protein	NA
UHGV-0043541_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043541_26	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0043541_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0043541_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043541_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0043541_27	UniRef90	UniRef90_A0A3A5PYW6	PBSX family phage terminase large subunit	NA
UHGV-0043541_27	eggNOG-mapper	1121871.AUAT01000040_gene913	Phage terminase, large subunit	NA
UHGV-0043541_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0043541_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0043541_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043541_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043541_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0043541_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0043541_28	UniRef90	UniRef90_A0A3A5PZS4	Terminase small subunit	NA
UHGV-0043541_28	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0043541_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0043541_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0043541_29	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0043541_29	UniRef90	UniRef90_A0A3A5Q0X9	Transcriptional regulator	NA
UHGV-0043541_29	eggNOG-mapper	1403946.Q615_SPAC00127G0144	Transcriptional regulator, ArpU family	NA
UHGV-0043541_29	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0043541_29	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0043541_33	PHROG	phrog_98	NA	unknown function
UHGV-0043541_33	UniRef90	UniRef90_A0A3A5PYJ7	YopX domain-containing protein	NA
UHGV-0043541_33	eggNOG-mapper	663952.SDD27957_09240	YopX protein	NA
UHGV-0043541_33	Pfam	PF09643	YopX protein	YopX
UHGV-0043541_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0043541_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0043541_34	PHROG	phrog_33566	NA	unknown function
UHGV-0043541_34	UniRef90	UniRef90_A0A139PKF0	NA	NA
UHGV-0043541_37	PHROG	phrog_121	NA	unknown function
UHGV-0043541_37	UniRef90	UniRef90_A0A3A5PYX6	NA	NA
UHGV-0043541_37	eggNOG-mapper	1095737.HMPREF1110_1213	NA	NA
UHGV-0043541_37	Pfam	PF07852	NA	DUF1642
UHGV-0043541_37	Structural annotation	PF07852	NA	NA
UHGV-0043541_38	PHROG	phrog_884	NA	unknown function
UHGV-0043541_38	UniRef90	UniRef90_A0A3A5PZT2	NA	NA
UHGV-0043541_38	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-0043541_38	Pfam	PF07116	NA	DUF1372
UHGV-0043541_38	Structural annotation	PF07116, COG3585	NA	NA
UHGV-0043541_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0043541_40	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043541_40	UniRef90	UniRef90_UPI000779343B	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0043541_40	eggNOG-mapper	1054460.SPPN_08990	NA	NA
UHGV-0043541_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0043541_41	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0043541_41	UniRef90	UniRef90_B0YL92	Orf42	NA
UHGV-0043541_41	eggNOG-mapper	1145276.T479_16305	NA	NA
UHGV-0043541_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043541_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043541_42	UniRef90	UniRef90_UPI001A9E20D8	single-stranded DNA-binding protein	NA
UHGV-0043541_42	eggNOG-mapper	1114965.Spaf_1703	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0043541_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043541_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043541_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043541_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043541_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0043541_43	PHROG	phrog_24565	NA	unknown function
UHGV-0043541_43	UniRef90	UniRef90_A8ATU1	Gp53	NA
UHGV-0043541_43	eggNOG-mapper	330398.A8ATU1_9CAUD	NA	NA
UHGV-0043541_43	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0043541_43	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0043541_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043541_44	UniRef90	UniRef90_A0A3A5Q8R0	Recombinase	NA
UHGV-0043541_44	eggNOG-mapper	1289595.M1Q0X6_9VIRU	ERF superfamily	NA
UHGV-0043541_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0043541_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0043541_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0043541_45	UniRef90	UniRef90_UPI0007666645	siphovirus Gp157 family protein	NA
UHGV-0043541_45	eggNOG-mapper	365659.smi_0420	Siphovirus Gp157	NA
UHGV-0043541_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0043541_45	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0043541_50	PHROG	phrog_3624	NA	unknown function
UHGV-0043541_51	PHROG	phrog_2113	NA	unknown function
UHGV-0043541_51	UniRef90	UniRef90_A0A4U9XZV3	NA	NA
UHGV-0043541_51	eggNOG-mapper	764299.STRIC_2517	NA	NA
UHGV-0043541_51	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-0043541_52	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0043541_52	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043541_52	UniRef90	UniRef90_A0A1F0YB84	AAA domain-containing protein	NA
UHGV-0043541_52	eggNOG-mapper	12402.Q708R1_9CAUD	IstB-like ATP binding protein	NA
UHGV-0043541_52	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0043541_52	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0043541_53	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0043541_53	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0043541_53	UniRef90	UniRef90_A0A3A5PYT2	DnaD domain protein	NA
UHGV-0043541_53	eggNOG-mapper	1214184.ALKY01000039_gene945	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0043541_53	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0043541_53	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0043541_53	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0043541_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0043541_53	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0043541_54	UniRef90	UniRef90_A0A1F0YAV1	Phage repressor protein	NA
UHGV-0043541_54	eggNOG-mapper	469609.HMPREF0847_02166	NA	NA
UHGV-0043541_54	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0043541_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0043541_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043541_55	UniRef90	UniRef90_A0A3A5Q0Z4	XRE family transcriptional regulator	NA
UHGV-0043541_55	eggNOG-mapper	469609.HMPREF0847_01324	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043541_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043541_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043541_55	Structural annotation	PF01381, MF_00535, TIGR02607, COG3655	NA	NA
UHGV-0043541_56	PHROG	phrog_87	metallo-protease	other
UHGV-0043541_56	UniRef90	UniRef90_A0A3A5QD98	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0043541_56	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0043541_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0043541_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0043541_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0043541_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0043541_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0043541_58	UniRef90	UniRef90_A0A3A5Q8R8	Recombinase family protein	NA
UHGV-0043541_58	eggNOG-mapper	1123309.AQYB01000022_gene10	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0043541_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0043541_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0043541_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0043541_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0043541_58	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA