UHGV-0043574

Genome information

Genome length 31,240 bps

CDS count 44

Completeness 99.90% (high-quality)

geNomad score 0.9626

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043574
vOTU ID	vOTU-014154
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4144
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9626
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.9
Jumbo phage	No

Genome content
Genome length	31,240 bps
GC content	35.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	87.98%
Average CDS length	627.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043574_1	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0043574_1	PHROG	phrog_729	cold shock protein	other
UHGV-0043574_1	UniRef90	UniRef90_A0A2Z6BK42	Cold-shock protein	NA
UHGV-0043574_1	eggNOG-mapper	226185.EF_1991	Cold shock	NA
UHGV-0043574_1	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-0043574_1	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0043574_1	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0043574_1	Structural annotation	PF00313, NF007062, COG1278	NA	NA
UHGV-0043574_2	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0043574_2	PHROG	phrog_291	endolysin	lysis
UHGV-0043574_2	UniRef90	UniRef90_E6F1Y4	Glycosyl hydrolase family 25	NA
UHGV-0043574_2	eggNOG-mapper	226185.EF_1992	and GP 10880731	NA
UHGV-0043574_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0043574_2	Pfam	PF01476	LysM domain	LysM
UHGV-0043574_2	COG	COG1388	LysM repeat	NA
UHGV-0043574_2	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0043574_3	PHROG	phrog_10091	holin	lysis
UHGV-0043574_3	UniRef90	UniRef90_A0A1J6XP00	Phage holin	NA
UHGV-0043574_3	eggNOG-mapper	226185.EF_1993	Bacteriophage holin	NA
UHGV-0043574_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0043574_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0043574_3	COG	COG5546	NA	NA
UHGV-0043574_4	PHROG	phrog_5620	NA	unknown function
UHGV-0043574_5	PHROG	phrog_134	NA	unknown function
UHGV-0043574_5	UniRef90	UniRef90_A0A2S7M0P2	XkdX family protein	NA
UHGV-0043574_5	eggNOG-mapper	396513.SCA_0513	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0043574_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0043574_5	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0043574_6	PHROG	phrog_1536	NA	unknown function
UHGV-0043574_6	eggNOG-mapper	1158602.I590_02582	NA	NA
UHGV-0043574_7	PHROG	phrog_7389	tail fiber protein	tail
UHGV-0043574_7	UniRef90	UniRef90_UPI001E50BC9F	pyocin knob domain-containing protein	NA
UHGV-0043574_7	eggNOG-mapper	1385512.N784_12985	conjugation	NA
UHGV-0043574_7	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0043574_8	PHROG	phrog_14448	NA	unknown function
UHGV-0043574_8	UniRef90	UniRef90_A0A059N434	BppU_IgG domain-containing protein	NA
UHGV-0043574_8	eggNOG-mapper	1605.Lani381_0872	NA	NA
UHGV-0043574_8	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0043574_8	Structural annotation	PF18667	NA	NA
UHGV-0043574_9	PHROG	phrog_3558	tail protein	tail
UHGV-0043574_9	UniRef90	UniRef90_E6ICQ5	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0043574_9	eggNOG-mapper	930946.AEOP01000024_gene607	Prophage endopeptidase tail	NA
UHGV-0043574_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0043574_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043574_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0043574_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043574_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043574_10	UniRef90	UniRef90_A0A3F3I1P5	Prophage Lp1 protein 51	NA
UHGV-0043574_10	eggNOG-mapper	930946.AEOP01000024_gene608	phage tail	NA
UHGV-0043574_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043574_10	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0043574_11	KOfam	K10400	KIF15; kinesin family member 15	NA
UHGV-0043574_11	PHROG	phrog_17321	NA	unknown function
UHGV-0043574_11	UniRef90	UniRef90_E6ICQ7	Phage tail tape measure protein, TP901 family	NA
UHGV-0043574_11	eggNOG-mapper	768486.EHR_00585	Phage-related minor tail protein	NA
UHGV-0043574_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0043574_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0043574_11	COG	COG3953	SLT domain protein	NA
UHGV-0043574_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0043574_12	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0043574_13	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0043574_13	UniRef90	UniRef90_UPI001E3018AE	tail assembly chaperone	NA
UHGV-0043574_13	eggNOG-mapper	663241.C9E2K2_9CAUD	Pfam:Phage_TAC_12	NA
UHGV-0043574_13	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0043574_13	Structural annotation	PF12363	NA	NA
UHGV-0043574_14	PHROG	phrog_12526	NA	unknown function
UHGV-0043574_14	UniRef90	UniRef90_A0A377KND4	Phage major tail protein, putative	NA
UHGV-0043574_14	eggNOG-mapper	1140001.I571_01752	NA	NA
UHGV-0043574_15	PHROG	phrog_238	major tail protein	tail
UHGV-0043574_15	UniRef90	UniRef90_R3JGG5	TP901-1 family phage major tail protein	NA
UHGV-0043574_15	eggNOG-mapper	930946.AEOP01000024_gene612	Phage tail tube protein	NA
UHGV-0043574_15	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0043574_15	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0043574_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0043574_16	PHROG	phrog_176	tail terminator	connector
UHGV-0043574_16	UniRef90	UniRef90_A0A1X3AJQ8	NA	NA
UHGV-0043574_16	eggNOG-mapper	930946.AEOP01000024_gene613	NA	NA
UHGV-0043574_16	Structural annotation	PF11367	NA	NA
UHGV-0043574_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043574_17	UniRef90	UniRef90_A0A422HPV5	HK97 gp10 family phage protein	NA
UHGV-0043574_17	eggNOG-mapper	35241.Q9AYW0_BPTU2	exonuclease activity	NA
UHGV-0043574_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043574_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0043574_17	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0043574_18	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0043574_18	eggNOG-mapper	1423724.BAMM01000023_gene1908	NA	NA
UHGV-0043574_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0043574_19	UniRef90	UniRef90_UPI00070E78BD	phage head-tail connector protein	NA
UHGV-0043574_19	eggNOG-mapper	1235796.C815_00917	Phage gp6-like head-tail connector protein	NA
UHGV-0043574_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0043574_19	Structural annotation	PF05135	NA	NA
UHGV-0043574_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0043574_20	UniRef90	UniRef90_UPI001912DE4A	capsid protein	NA
UHGV-0043574_20	eggNOG-mapper	1300150.EMQU_2264	NA	NA
UHGV-0043574_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043574_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0043574_21	UniRef90	UniRef90_UPI0011584209	NA	NA
UHGV-0043574_21	Pfam	PF14265	NA	DUF4355
UHGV-0043574_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0043574_22	UniRef90	UniRef90_E6ICR8	Phage protein F-like protein	NA
UHGV-0043574_22	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0043574_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0043574_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0043574_22	COG	COG2369	NA	NA
UHGV-0043574_22	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0043574_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0043574_23	UniRef90	UniRef90_A0A8I1K0Z3	Phage portal protein	NA
UHGV-0043574_23	eggNOG-mapper	272558.10176156	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0043574_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043574_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0043574_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0043574_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043574_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0043574_24	UniRef90	UniRef90_E6ICS0	Phage terminase, large subunit, PBSX family	NA
UHGV-0043574_24	eggNOG-mapper	1260356.D920_01730	Terminase-like family	NA
UHGV-0043574_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0043574_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0043574_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0043574_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043574_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0043574_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0043574_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0043574_25	UniRef90	UniRef90_A0A125W400	Terminase small subunit	NA
UHGV-0043574_25	eggNOG-mapper	1260356.D920_01729	Terminase small subunit	NA
UHGV-0043574_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0043574_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0043574_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0043574_26	PHROG	phrog_1202	NA	unknown function
UHGV-0043574_26	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-0043574_26	Structural annotation	PF18789	NA	NA
UHGV-0043574_27	eggNOG-mapper	697281.Mahau_0079	NA	NA
UHGV-0043574_28	eggNOG-mapper	315730.BcerKBAB4_3436	NA	NA
UHGV-0043574_28	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-0043574_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0043574_30	UniRef90	UniRef90_D2IYV6	Transcriptional regulator ArpU family	NA
UHGV-0043574_30	eggNOG-mapper	226185.EF_2024	ArpU family	NA
UHGV-0043574_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0043574_30	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0043574_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0043574_31	PHROG	phrog_38758	NA	unknown function
UHGV-0043574_31	UniRef90	UniRef90_E0HH30	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0043574_31	eggNOG-mapper	673832.D2IYU2_9CAUD	magnesium ion binding	NA
UHGV-0043574_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0043574_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0043574_32	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0043574_32	UniRef90	UniRef90_R3I024	Phage_rep_org_N domain-containing protein	NA
UHGV-0043574_32	eggNOG-mapper	663241.C9E2N2_9CAUD	calcium ion binding	NA
UHGV-0043574_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0043574_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0043574_32	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0043574_33	PHROG	phrog_19301	NA	unknown function
UHGV-0043574_34	PHROG	phrog_398	NA	unknown function
UHGV-0043574_34	UniRef90	UniRef90_UPI000DEBC8E3	putative HNHc nuclease	NA
UHGV-0043574_34	eggNOG-mapper	663241.C9E2N1_9CAUD	Pfam:HNHc_6	NA
UHGV-0043574_34	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0043574_34	Structural annotation	PF16784	NA	NA
UHGV-0043574_35	PHROG	phrog_674	NA	unknown function
UHGV-0043574_35	UniRef90	UniRef90_UPI001CF35DC8	NA	NA
UHGV-0043574_35	eggNOG-mapper	663241.C9E2N0_9CAUD	NA	NA
UHGV-0043574_35	Pfam	PF07083	NA	DUF1351
UHGV-0043574_35	Structural annotation	PF07083	NA	NA
UHGV-0043574_36	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043574_36	UniRef90	UniRef90_A0A2S7M5R4	Single-stranded DNA-binding protein	NA
UHGV-0043574_36	eggNOG-mapper	663241.C9E2M9_9CAUD	ERF superfamily	NA
UHGV-0043574_36	Pfam	PF04404	ERF superfamily	ERF
UHGV-0043574_37	PHROG	phrog_5100	NA	unknown function
UHGV-0043574_38	PHROG	phrog_4690	NA	unknown function
UHGV-0043574_38	eggNOG-mapper	1300150.EMQU_0761	NA	NA
UHGV-0043574_39	PHROG	phrog_1270	NA	unknown function
UHGV-0043574_40	PHROG	phrog_1422	NA	unknown function
UHGV-0043574_40	UniRef90	UniRef90_S4CJ67	NA	NA
UHGV-0043574_40	eggNOG-mapper	226185.EF_2036	NA	NA
UHGV-0043574_40	Pfam	PF07411	NA	DUF1508
UHGV-0043574_40	COG	COG3422	NA	NA
UHGV-0043574_40	Structural annotation	PF07411, NF041908, COG3422	NA	NA
UHGV-0043574_41	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0043574_41	UniRef90	UniRef90_UPI00155849FF	ORF6C domain-containing protein	NA
UHGV-0043574_41	eggNOG-mapper	226185.EF_2037	ORF6C domain	NA
UHGV-0043574_41	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0043574_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0043574_41	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0043574_41	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0043574_41	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0043574_42	PHROG	phrog_14980	NA	unknown function
UHGV-0043574_42	eggNOG-mapper	574376.BAMA_02040	NA	NA
UHGV-0043574_43	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0043574_43	UniRef90	UniRef90_A0A1X3AWU8	XRE family transcriptional regulator	NA
UHGV-0043574_43	eggNOG-mapper	1201292.DR75_1671	NA	NA
UHGV-0043574_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043574_43	Structural annotation	PF12844, NF041677, COG3655	NA	NA
UHGV-0043574_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043574_44	UniRef90	UniRef90_A0A4U4BUG4	Helix-turn-helix transcriptional regulator	NA
UHGV-0043574_44	eggNOG-mapper	226185.EF_2852	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043574_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0043574_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043574_44	Structural annotation	PF12844, NF041951, COG3655	NA	NA