UHGV-0043684

Genome information

Genome length 32,302 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043684
vOTU ID	vOTU-055628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_10491
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.71
Jumbo phage	No

Genome content
Genome length	32,302 bps
GC content	34.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	83.73%
Average CDS length	521.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043684_3	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0043684_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0043684_4	PHROG	phrog_1493	endolysin	lysis
UHGV-0043684_4	UniRef90	UniRef90_A0A1Q6MQM1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0043684_4	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0043684_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0043684_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0043684_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0043684_4	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0043684_6	PHROG	phrog_1129	holin	lysis
UHGV-0043684_6	UniRef90	UniRef90_A0A3E3DX81	Holin	NA
UHGV-0043684_6	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0043684_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0043684_6	Structural annotation	PF06946	NA	NA
UHGV-0043684_7	PHROG	phrog_1382	NA	unknown function
UHGV-0043684_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0043684_7	Structural annotation	NF040910	NA	NA
UHGV-0043684_11	PHROG	phrog_9534	head protein	head and packaging
UHGV-0043684_11	eggNOG-mapper	574376.BAMA_24785	NA	NA
UHGV-0043684_11	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0043684_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0043684_12	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0043684_12	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0043684_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0043684_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043684_13	PHROG	phrog_36410	NA	unknown function
UHGV-0043684_13	UniRef90	UniRef90_E2NU67	Putative phage tail component domain protein	NA
UHGV-0043684_13	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0043684_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0043684_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043684_13	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0043684_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0043684_14	UniRef90	UniRef90_UPI00148DE247	phage tail protein	NA
UHGV-0043684_14	eggNOG-mapper	883110.HMPREF9260_00650	Phage tail tape measure protein TP901	NA
UHGV-0043684_14	COG	COG5412	Phage-related protein	NA
UHGV-0043684_14	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0043684_15	PHROG	phrog_1633	NA	unknown function
UHGV-0043684_15	UniRef90	UniRef90_UPI0008268BC5	NA	NA
UHGV-0043684_15	eggNOG-mapper	1321820.HMPREF1983_00925	NA	NA
UHGV-0043684_15	Pfam	PF17318	NA	DUF5361
UHGV-0043684_15	Structural annotation	PF17318	NA	NA
UHGV-0043684_16	PHROG	phrog_1526	NA	unknown function
UHGV-0043684_16	eggNOG-mapper	908337.HMPREF9257_0531	NA	NA
UHGV-0043684_17	PHROG	phrog_117	major tail protein	tail
UHGV-0043684_17	UniRef90	UniRef90_E2NU71	Prophage LambdaSa1, structural protein	NA
UHGV-0043684_17	eggNOG-mapper	1123263.AUKY01000068_gene494	NA	NA
UHGV-0043684_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0043684_18	PHROG	phrog_123	tail terminator	connector
UHGV-0043684_18	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0043684_18	Structural annotation	PF06141	NA	NA
UHGV-0043684_19	PHROG	phrog_387	neck protein	connector
UHGV-0043684_19	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0043684_19	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-0043684_20	PHROG	phrog_501	head closure Hc1	connector
UHGV-0043684_20	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0043684_20	eggNOG-mapper	1423775.BAMN01000011_gene601	NA	NA
UHGV-0043684_20	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0043684_21	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0043684_21	UniRef90	UniRef90_E2NU75	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0043684_21	eggNOG-mapper	1321820.HMPREF1983_00931	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0043684_21	Pfam	PF09355	NA	Phage_Gp19
UHGV-0043684_21	Structural annotation	PF09355	NA	NA
UHGV-0043684_22	PHROG	phrog_267	major head protein	head and packaging
UHGV-0043684_22	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0043684_22	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0043684_22	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043684_23	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0043684_23	UniRef90	UniRef90_UPI000978A7C1	phage scaffold protein	NA
UHGV-0043684_23	eggNOG-mapper	879308.HMPREF9130_1232	NA	NA
UHGV-0043684_23	Pfam	PF14265	NA	DUF4355
UHGV-0043684_23	Structural annotation	PF14265	NA	NA
UHGV-0043684_24	PHROG	phrog_17688	NA	unknown function
UHGV-0043684_24	UniRef90	UniRef90_E2NU78	Putative phage terminase, large subunit	NA
UHGV-0043684_24	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0043684_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043684_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0043684_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0043684_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0043684_25	UniRef90	UniRef90_A0A0K1LJA3	DNA methylase	NA
UHGV-0043684_25	eggNOG-mapper	1327981.R9ZYG2_9CAUD	helicase activity	NA
UHGV-0043684_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0043684_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0043684_25	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0043684_26	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0043684_26	UniRef90	UniRef90_UPI0006D7B88B	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0043684_26	eggNOG-mapper	938278.CAJO01000051_gene791	NA	NA
UHGV-0043684_27	PHROG	phrog_104	portal protein	head and packaging
UHGV-0043684_27	UniRef90	UniRef90_A0A1C5Y923	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0043684_27	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0043684_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0043684_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0043684_28	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043684_28	UniRef90	UniRef90_E2NU82	HNH endonuclease domain protein	NA
UHGV-0043684_28	eggNOG-mapper	1232446.BAIE02000011_gene1603	HNH endonuclease domain protein	NA
UHGV-0043684_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0043684_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0043684_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0043684_29	PHROG	phrog_30609	NA	unknown function
UHGV-0043684_29	Structural annotation	PF21485	NA	NA
UHGV-0043684_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043684_30	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0043684_30	Pfam	PF07374	NA	DUF1492
UHGV-0043684_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0043684_30	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0043684_32	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043684_32	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0043684_32	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0043684_32	Pfam	PF06356	NA	DUF1064
UHGV-0043684_32	Structural annotation	PF06356	NA	NA
UHGV-0043684_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043684_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043684_33	UniRef90	UniRef90_UPI0006C3F2C5	single-stranded DNA-binding protein	NA
UHGV-0043684_33	eggNOG-mapper	1504823.CCMM01000012_gene1971	Single-strand binding protein family	NA
UHGV-0043684_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043684_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043684_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043684_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043684_33	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0043684_36	PHROG	phrog_22292	NA	unknown function
UHGV-0043684_36	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0043684_37	PHROG	phrog_22292	NA	unknown function
UHGV-0043684_37	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0043684_39	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0043684_39	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0043684_39	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0043684_39	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0043684_39	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0043684_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0043684_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043684_41	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-0043684_41	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0043684_41	Pfam	PF03837	RecT family	RecT
UHGV-0043684_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0043684_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0043684_41	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0043684_44	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043684_44	UniRef90	UniRef90_UPI0014313337	YqaJ viral recombinase family protein	NA
UHGV-0043684_44	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0043684_44	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0043684_44	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0043684_44	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0043684_44	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0043684_47	UniRef90	UniRef90_A0A3N0I2X1	XRE family transcriptional regulator	NA
UHGV-0043684_47	eggNOG-mapper	411465.PEPMIC_00039	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043684_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043684_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043684_49	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0043684_51	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0043684_51	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0043684_51	UniRef90	UniRef90_UPI0018A91BF3	AAA family ATPase	NA
UHGV-0043684_51	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0043684_51	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0043684_51	COG	COG0305	Replicative DNA helicase	NA
UHGV-0043684_51	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0043684_52	Pfam	PF13730	Helix-turn-helix domain	HTH_36