UHGV-0043728

Genome information

vOTU vOTU-020700

Genome length 25,576 bps

CDS count 42

Completeness 84.49% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043728
vOTU ID	vOTU-020700
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_13693
BioSample	SAMEA2042924
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.6
Jumbo phage	No

Genome content
Genome length	25,576 bps
GC content	30.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.53%
Average CDS length	580.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043728_2	PHROG	phrog_11037	NA	unknown function
UHGV-0043728_2	UniRef90	UniRef90_R6T0A5	SH3 domain protein	NA
UHGV-0043728_2	eggNOG-mapper	908340.HMPREF9406_0845	NA	NA
UHGV-0043728_2	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0043728_5	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0043728_7	PHROG	phrog_1220	head protein	head and packaging
UHGV-0043728_7	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0043728_7	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-0043728_7	Structural annotation	PF20747	NA	NA
UHGV-0043728_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0043728_8	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0043728_8	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0043728_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0043728_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043728_9	PHROG	phrog_36410	NA	unknown function
UHGV-0043728_9	UniRef90	UniRef90_R6SIV1	Conserved domain protein	NA
UHGV-0043728_9	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0043728_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0043728_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043728_9	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0043728_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0043728_10	UniRef90	UniRef90_R6TR60	Phage tail tape measure protein TP901 family	NA
UHGV-0043728_10	eggNOG-mapper	411471.SUBVAR_05860	tail tape measure protein, TP901	NA
UHGV-0043728_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0043728_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0043728_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0043728_12	PHROG	phrog_885	major tail protein	tail
UHGV-0043728_12	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0043728_12	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0043728_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0043728_13	PHROG	phrog_957	head protein	head and packaging
UHGV-0043728_13	Structural annotation	PF11367	NA	NA
UHGV-0043728_14	Structural annotation	TIGR01725	NA	NA
UHGV-0043728_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0043728_15	UniRef90	UniRef90_R6TR55	Prophage pi2 protein	NA
UHGV-0043728_15	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0043728_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0043728_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043728_16	PHROG	phrog_5223	neck protein	connector
UHGV-0043728_16	UniRef90	UniRef90_R6T093	Putative phage DNA packaging-like protein	NA
UHGV-0043728_16	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0043728_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043728_18	UniRef90	UniRef90_R6SUA7	Phage major capsid protein HK97 family	NA
UHGV-0043728_18	eggNOG-mapper	1235755.ANAM01000006_gene2375	Phage capsid family	NA
UHGV-0043728_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043728_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043728_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0043728_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043728_19	KOfam	K06904	NA	NA
UHGV-0043728_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0043728_19	UniRef90	UniRef90_R6TR51	Phage prohead protease HK97 family	NA
UHGV-0043728_19	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0043728_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0043728_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0043728_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0043728_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043728_21	UniRef90	UniRef90_R6SME9	Phage portal protein HK97 family	NA
UHGV-0043728_21	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0043728_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043728_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043728_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043728_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043728_22	UniRef90	UniRef90_R6SUA2	Terminase	NA
UHGV-0043728_22	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0043728_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043728_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043728_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043728_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0043728_23	PHROG	phrog_1066	NA	unknown function
UHGV-0043728_23	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0043728_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0043728_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043728_25	UniRef90	UniRef90_R6T084	HNH domain-containing protein	NA
UHGV-0043728_25	eggNOG-mapper	315730.BcerKBAB4_3433	HNH endonuclease	NA
UHGV-0043728_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0043728_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043728_26	UniRef90	UniRef90_R6SME5	DNA-directed RNA polymerase specialized sigma subunit sigma24	NA
UHGV-0043728_26	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0043728_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0043728_26	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0043728_31	Structural annotation	PF01485	NA	NA
UHGV-0043728_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0043728_35	PHROG	phrog_216	integrase	integration and excision
UHGV-0043728_35	UniRef90	UniRef90_R6TR31	Site-specific recombinase phage integrase family	NA
UHGV-0043728_35	eggNOG-mapper	632335.Calkr_2638	integrase family	NA
UHGV-0043728_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043728_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043728_35	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0043728_38	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043728_38	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-0043728_38	eggNOG-mapper	1291050.JAGE01000002_gene3265	NA	NA
UHGV-0043728_38	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0043728_38	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0043728_39	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0043728_39	PHROG	phrog_27338	NA	unknown function
UHGV-0043728_39	UniRef90	UniRef90_R6SU83	Putative septation protein SpoVG	NA
UHGV-0043728_39	eggNOG-mapper	944481.JAFP01000001_gene1200	SpoVG	NA
UHGV-0043728_39	Pfam	PF04026	SpoVG	SpoVG
UHGV-0043728_39	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0043728_39	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0043728_40	PHROG	phrog_322	NA	unknown function
UHGV-0043728_40	UniRef90	UniRef90_UPI000BF6D344	Gp49 family protein	NA
UHGV-0043728_40	eggNOG-mapper	1405.DJ92_5252	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0043728_40	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0043728_40	dbAPIS	APIS043	NA	NA
UHGV-0043728_40	Structural annotation	PF13876	NA	NA
UHGV-0043728_41	PHROG	phrog_16304	NA	unknown function
UHGV-0043728_41	eggNOG-mapper	1384065.JAGS01000001_gene1055	NA	NA
UHGV-0043728_41	Pfam	PF19808	NA	DUF6291
UHGV-0043728_41	Structural annotation	PF19808	NA	NA