UHGV-0043735

Genome information

Genome length 37,300 bps

CDS count 52

Completeness 94.85% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043735
vOTU ID	vOTU-080122
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4379
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.94
Jumbo phage	No

Genome content
Genome length	37,300 bps
GC content	30.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.13%
Average CDS length	661.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043735_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0043735_4	PHROG	phrog_291	endolysin	lysis
UHGV-0043735_4	UniRef90	UniRef90_UPI0011C9D1E8	glycoside hydrolase family 25 protein	NA
UHGV-0043735_4	eggNOG-mapper	1211819.CALK01000009_gene2765	Glycosyl hydrolases family 25	NA
UHGV-0043735_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0043735_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0043735_4	Structural annotation	PF01183, TIGR02495, COG3757	NA	NA
UHGV-0043735_6	UniRef90	UniRef90_UPI00189AA7F1	hemolysin XhlA family protein	NA
UHGV-0043735_6	eggNOG-mapper	1294142.CINTURNW_1046	Haemolysin XhlA	NA
UHGV-0043735_6	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0043735_7	PHROG	phrog_18444	NA	unknown function
UHGV-0043735_7	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0043735_8	PHROG	phrog_16267	NA	unknown function
UHGV-0043735_8	UniRef90	UniRef90_U2NPC0	KID repeat-containing protein	NA
UHGV-0043735_8	eggNOG-mapper	1280692.AUJL01000027_gene2144	Phage minor structural protein	NA
UHGV-0043735_8	COG	COG4926	Phage-related protein	NA
UHGV-0043735_8	Structural annotation	PF14594, PF21471, NF033848, NF012201, COG3500	NA	NA
UHGV-0043735_9	PHROG	phrog_1401	NA	unknown function
UHGV-0043735_9	UniRef90	UniRef90_UPI0018ABCBD1	NA	NA
UHGV-0043735_9	eggNOG-mapper	1499683.CCFF01000014_gene3897	NA	NA
UHGV-0043735_9	Structural annotation	PF07761	NA	NA
UHGV-0043735_10	PHROG	phrog_1194	NA	unknown function
UHGV-0043735_10	UniRef90	UniRef90_A0A0R1VMM5	NA	NA
UHGV-0043735_10	eggNOG-mapper	1499683.CCFF01000014_gene3899	NA	NA
UHGV-0043735_10	Pfam	PF20458	NA	DUF6711
UHGV-0043735_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0043735_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0043735_11	UniRef90	UniRef90_A0A1I2KTM2	Phage-related protein	NA
UHGV-0043735_11	eggNOG-mapper	1321778.HMPREF1982_02681	SLT domain	NA
UHGV-0043735_11	COG	COG1511	NA	NA
UHGV-0043735_12	PHROG	phrog_3845	NA	unknown function
UHGV-0043735_12	UniRef90	UniRef90_A0A446IAV5	bPH_3 domain-containing protein	NA
UHGV-0043735_12	eggNOG-mapper	86416.Clopa_0586	NA	NA
UHGV-0043735_13	PHROG	phrog_8355	NA	unknown function
UHGV-0043735_13	UniRef90	UniRef90_UPI000665A2C9	Gp15 family bacteriophage protein	NA
UHGV-0043735_13	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0043735_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0043735_13	Structural annotation	PF06854	NA	NA
UHGV-0043735_14	PHROG	phrog_8300	NA	unknown function
UHGV-0043735_14	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-0043735_14	Structural annotation	PF06896	NA	NA
UHGV-0043735_15	PHROG	phrog_820	major tail protein	tail
UHGV-0043735_15	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0043735_15	COG	COG5492	NA	NA
UHGV-0043735_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0043735_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0043735_16	UniRef90	UniRef90_UPI000C08D995	minor capsid protein	NA
UHGV-0043735_16	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0043735_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0043735_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0043735_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0043735_17	UniRef90	UniRef90_UPI000C085B44	minor capsid protein	NA
UHGV-0043735_17	eggNOG-mapper	1280692.AUJL01000027_gene2156	Minor capsid protein	NA
UHGV-0043735_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0043735_18	PHROG	phrog_8710	NA	unknown function
UHGV-0043735_18	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0043735_18	eggNOG-mapper	1391647.AVSV01000003_gene1811	NA	NA
UHGV-0043735_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0043735_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0043735_19	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0043735_20	PHROG	phrog_1378	NA	unknown function
UHGV-0043735_20	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0043735_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0043735_21	UniRef90	UniRef90_UPI000C06A988	capsid protein	NA
UHGV-0043735_21	eggNOG-mapper	1280692.AUJL01000027_gene2160	NA	NA
UHGV-0043735_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043735_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0043735_22	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0043735_22	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0043735_22	Structural annotation	PF10788	NA	NA
UHGV-0043735_23	eggNOG-mapper	1262449.CP6013_3194	NA	NA
UHGV-0043735_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0043735_24	UniRef90	UniRef90_UPI001899C2F6	capsid protein	NA
UHGV-0043735_24	eggNOG-mapper	1280692.AUJL01000027_gene2164	Phage minor capsid protein 2	NA
UHGV-0043735_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0043735_24	COG	COG2369	NA	NA
UHGV-0043735_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0043735_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0043735_25	UniRef90	UniRef90_UPI001898ADC2	capsid protein	NA
UHGV-0043735_25	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0043735_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0043735_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043735_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0043735_26	UniRef90	UniRef90_UPI001898DC74	terminase family protein	NA
UHGV-0043735_26	eggNOG-mapper	1280692.AUJL01000027_gene2166	Phage terminase, large subunit, PBSX family	NA
UHGV-0043735_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0043735_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043735_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0043735_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0043735_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0043735_27	UniRef90	UniRef90_UPI0011CAB70D	terminase small subunit	NA
UHGV-0043735_27	eggNOG-mapper	1294142.CINTURNW_1022	Terminase Small Subunit	NA
UHGV-0043735_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0043735_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0043735_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0043735_29	eggNOG-mapper	1384057.CD33_14075	NA	NA
UHGV-0043735_30	UniRef90	UniRef90_A0A1C6JMI4	Alternative sigma factor RpoH	NA
UHGV-0043735_30	eggNOG-mapper	1280689.AUJC01000003_gene954	NA	NA
UHGV-0043735_30	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0043735_31	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0043735_31	UniRef90	UniRef90_UPI0011CCC83C	radical SAM protein	NA
UHGV-0043735_31	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0043735_31	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0043735_31	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0043735_32	Structural annotation	NF009256	NA	NA
UHGV-0043735_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043735_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043735_34	UniRef90	UniRef90_UPI0011CBF5CD	single-stranded DNA-binding protein	NA
UHGV-0043735_34	eggNOG-mapper	1280689.AUJC01000003_gene949	Single-stranded DNA-binding protein	NA
UHGV-0043735_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043735_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043735_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043735_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043735_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0043735_35	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0043735_35	UniRef90	UniRef90_UPI001E5D92BC	NA	NA
UHGV-0043735_35	eggNOG-mapper	1280689.AUJC01000003_gene945	NA	NA
UHGV-0043735_35	Pfam	PF06356	NA	DUF1064
UHGV-0043735_35	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0043735_36	PHROG	phrog_1029	NA	unknown function
UHGV-0043735_36	eggNOG-mapper	1280689.AUJC01000003_gene944	NA	NA
UHGV-0043735_36	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0043735_37	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0043735_37	UniRef90	UniRef90_UPI00189D84FA	replication terminator protein	NA
UHGV-0043735_37	eggNOG-mapper	1280689.AUJC01000003_gene943	replication terminator protein, phage associated	NA
UHGV-0043735_38	PHROG	phrog_25509	NA	unknown function
UHGV-0043735_38	eggNOG-mapper	1196322.A370_05735	NA	NA
UHGV-0043735_39	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043735_39	UniRef90	UniRef90_A0A6B4KH41	DNA replication protein DnaD	NA
UHGV-0043735_39	eggNOG-mapper	1415774.U728_770	DnaD domain protein	NA
UHGV-0043735_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0043735_39	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0043735_40	PHROG	phrog_674	NA	unknown function
UHGV-0043735_40	UniRef90	UniRef90_UPI00189D94AA	NA	NA
UHGV-0043735_40	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0043735_40	Pfam	PF07083	NA	DUF1351
UHGV-0043735_40	Structural annotation	PF07083	NA	NA
UHGV-0043735_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0043735_41	UniRef90	UniRef90_UPI0011C9510C	ERF family protein	NA
UHGV-0043735_41	eggNOG-mapper	1280689.AUJC01000003_gene936	ERF superfamily	NA
UHGV-0043735_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-0043735_41	Structural annotation	PF04404	NA	NA
UHGV-0043735_42	eggNOG-mapper	1391647.AVSV01000003_gene1787	NA	NA
UHGV-0043735_45	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0043735_45	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0043735_45	UniRef90	UniRef90_UPI00066880A0	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0043735_45	eggNOG-mapper	748727.CLJU_c36620	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0043735_45	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0043735_45	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0043735_45	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0043735_45	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0043735_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0043735_45	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0043735_47	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0043735_47	UniRef90	UniRef90_UPI001899842F	transcription factor	NA
UHGV-0043735_47	eggNOG-mapper	1415774.U728_1638	NA	NA
UHGV-0043735_47	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0043735_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0043735_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0043735_48	UniRef90	UniRef90_UPI00066872C0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0043735_48	eggNOG-mapper	536233.CLO_0955	BRO family, N-terminal domain	NA
UHGV-0043735_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0043735_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0043735_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0043735_48	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0043735_49	UniRef90	UniRef90_UPI0011C9DC86	NA	NA
UHGV-0043735_49	eggNOG-mapper	1121947.AUHK01000002_gene903	NA	NA
UHGV-0043735_49	Pfam	PF05339	NA	DUF739
UHGV-0043735_49	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0043735_49	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0043735_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043735_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0043735_50	UniRef90	UniRef90_UPI0018997735	transcriptional regulator	NA
UHGV-0043735_50	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0043735_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043735_50	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0043735_51	PHROG	phrog_87	metallo-protease	other
UHGV-0043735_51	UniRef90	UniRef90_UPI00066575B2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0043735_51	eggNOG-mapper	929506.CbC4_1185	Zn peptidase	NA
UHGV-0043735_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0043735_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0043735_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0043735_52	KOfam	K14059	int; integrase	NA
UHGV-0043735_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0043735_52	UniRef90	UniRef90_UPI0018A009AD	site-specific integrase	NA
UHGV-0043735_52	eggNOG-mapper	632245.CLP_2648	Belongs to the 'phage' integrase family	NA
UHGV-0043735_52	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0043735_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043735_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043735_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA