UHGV-0043781

Genome information

Genome length 42,203 bps

CDS count 58

Completeness 97.47% (high-quality)

geNomad score 0.9620

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043781
vOTU ID	vOTU-079066
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2878
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9620
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.1
Jumbo phage	No

Genome content
Genome length	42,203 bps
GC content	28.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.42%
Average CDS length	652.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043781_3	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043781_3	UniRef90	UniRef90_UPI00024961F0	replication initiator protein A	NA
UHGV-0043781_3	eggNOG-mapper	862971.SANR_1419	Replication initiator protein A	NA
UHGV-0043781_3	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0043781_3	Structural annotation	PF06970	NA	NA
UHGV-0043781_4	PHROG	phrog_14312	NA	unknown function
UHGV-0043781_4	UniRef90	UniRef90_A0A2X3ACD6	CopG family transcriptional regulator	NA
UHGV-0043781_5	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0043781_5	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0043781_5	UniRef90	UniRef90_B1BWB1	StbA protein	NA
UHGV-0043781_5	eggNOG-mapper	999411.HMPREF1092_03292	Heat shock 70 kDa protein	NA
UHGV-0043781_5	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0043781_5	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0043781_5	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-0043781_5	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0043781_7	PHROG	phrog_34041	NA	unknown function
UHGV-0043781_7	eggNOG-mapper	1345023.M467_12095	nuclease activity	NA
UHGV-0043781_8	PHROG	phrog_2727	NA	unknown function
UHGV-0043781_8	UniRef90	UniRef90_UPI001A30260E	phage antirepressor KilAC domain-containing protein	NA
UHGV-0043781_8	Structural annotation	PF14056, COG1321	NA	NA
UHGV-0043781_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0043781_9	PHROG	phrog_291	endolysin	lysis
UHGV-0043781_9	UniRef90	UniRef90_A0A384T976	PlyCP41	NA
UHGV-0043781_9	eggNOG-mapper	999411.HMPREF1092_03301	family 25	NA
UHGV-0043781_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0043781_9	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0043781_9	Pfam	PF06347	Bacterial SH3 domain	SH3_4
UHGV-0043781_9	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0043781_10	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0043781_10	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0043781_10	UniRef90	UniRef90_UPI00096A28B4	DNA adenine methylase	NA
UHGV-0043781_10	eggNOG-mapper	396359.Q0SPG6_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0043781_10	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0043781_10	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0043781_10	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0043781_10	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0043781_11	PHROG	phrog_9492	NA	unknown function
UHGV-0043781_11	UniRef90	UniRef90_A0A8H9UYL4	Cobalt ABC transporter permease	NA
UHGV-0043781_11	eggNOG-mapper	1391647.AVSV01000021_gene2231	NA	NA
UHGV-0043781_12	PHROG	phrog_199	holin	lysis
UHGV-0043781_12	UniRef90	UniRef90_A0A8H9UXV5	Phage holin family protein	NA
UHGV-0043781_12	eggNOG-mapper	1305708.M9Q253_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0043781_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0043781_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0043781_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0043781_13	PHROG	phrog_2310	NA	unknown function
UHGV-0043781_13	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0043781_14	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0043781_14	UniRef90	UniRef90_UPI00024961FB	BppU family phage baseplate upper protein	NA
UHGV-0043781_14	eggNOG-mapper	195103.CPF_1572	NA	NA
UHGV-0043781_14	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0043781_14	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0043781_15	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0043781_15	PHROG	phrog_27548	NA	unknown function
UHGV-0043781_15	UniRef90	UniRef90_A0A6M1WLP0	MBL fold metallo-hydrolase	NA
UHGV-0043781_15	eggNOG-mapper	195103.CPF_1573	competence protein COMEC	NA
UHGV-0043781_15	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0043781_15	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0043781_15	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0043781_15	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0043781_16	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0043781_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0043781_16	UniRef90	UniRef90_UPI0013E34CC3	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0043781_16	eggNOG-mapper	1187894.I2E8W3_9CAUD	peptidoglycan catabolic process	NA
UHGV-0043781_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0043781_16	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0043781_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043781_16	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-0043781_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043781_17	UniRef90	UniRef90_B1BWF5	Putative phage tail component, N-domain protein	NA
UHGV-0043781_17	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0043781_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0043781_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043781_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0043781_18	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0043781_18	UniRef90	UniRef90_UPI001F361DA2	tape measure protein	NA
UHGV-0043781_18	eggNOG-mapper	1292035.H476_1006	tape measure	NA
UHGV-0043781_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0043781_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0043781_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0043781_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0043781_19	PHROG	phrog_17658	NA	unknown function
UHGV-0043781_19	UniRef90	UniRef90_A0A5C6ZD16	Zinc ribbon domain-containing protein	NA
UHGV-0043781_19	eggNOG-mapper	903814.ELI_3198	NA	NA
UHGV-0043781_19	Structural annotation	PF16979	NA	NA
UHGV-0043781_20	PHROG	phrog_706	NA	unknown function
UHGV-0043781_20	UniRef90	UniRef90_UPI001C867059	Gp15 family bacteriophage protein	NA
UHGV-0043781_20	eggNOG-mapper	1292035.H476_1007	Bacteriophage Gp15 protein	NA
UHGV-0043781_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0043781_20	Structural annotation	PF06854	NA	NA
UHGV-0043781_21	PHROG	phrog_4450	NA	unknown function
UHGV-0043781_21	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0043781_21	eggNOG-mapper	663278.Ethha_0100	NA	NA
UHGV-0043781_21	Pfam	PF20378	NA	DUF6673
UHGV-0043781_21	Structural annotation	PF20378	NA	NA
UHGV-0043781_22	PHROG	phrog_3099	NA	unknown function
UHGV-0043781_22	eggNOG-mapper	1292035.H476_1009	NA	NA
UHGV-0043781_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0043781_23	PHROG	phrog_3266	tail completion	connector
UHGV-0043781_23	UniRef90	UniRef90_UPI000993FDE6	chloramphenicol resistance protein	NA
UHGV-0043781_23	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-0043781_23	Structural annotation	PF12691	NA	NA
UHGV-0043781_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0043781_24	UniRef90	UniRef90_UPI00016BD3C0	minor capsid protein	NA
UHGV-0043781_24	eggNOG-mapper	1292035.H476_1011	Minor capsid protein	NA
UHGV-0043781_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0043781_24	Structural annotation	PF11114	NA	NA
UHGV-0043781_25	PHROG	phrog_3366	NA	unknown function
UHGV-0043781_25	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0043781_25	Pfam	PF20536	NA	DUF6751
UHGV-0043781_25	Structural annotation	PF20536	NA	NA
UHGV-0043781_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0043781_26	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0043781_27	PHROG	phrog_247	major head protein	head and packaging
UHGV-0043781_27	UniRef90	UniRef90_A0A336Q6M5	Phage capsid protein	NA
UHGV-0043781_27	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0043781_27	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0043781_27	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0043781_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0043781_28	UniRef90	UniRef90_B1BWE4	Phage minor structural protein GP20	NA
UHGV-0043781_28	eggNOG-mapper	1292035.H476_1015	Phage minor structural protein GP20	NA
UHGV-0043781_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0043781_28	Structural annotation	PF06810	NA	NA
UHGV-0043781_29	PHROG	phrog_3202	NA	unknown function
UHGV-0043781_29	UniRef90	UniRef90_A0A336QE67	YjzC family protein	NA
UHGV-0043781_29	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0043781_29	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0043781_29	Structural annotation	PF14168	NA	NA
UHGV-0043781_30	PHROG	phrog_10400	NA	unknown function
UHGV-0043781_30	UniRef90	UniRef90_A5MYM9	Phage-related protein	NA
UHGV-0043781_30	eggNOG-mapper	1567014.A0A0A7RTU6_9VIRU	NA	NA
UHGV-0043781_31	PHROG	phrog_2428	NA	unknown function
UHGV-0043781_31	UniRef90	UniRef90_A0A6M1WQ43	ABC transporter ATPase	NA
UHGV-0043781_31	eggNOG-mapper	318464.IO99_00570	NA	NA
UHGV-0043781_31	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0043781_32	PHROG	phrog_9467	NA	unknown function
UHGV-0043781_32	UniRef90	UniRef90_A0A336QAM4	SAM-dependent methyltransferase	NA
UHGV-0043781_32	eggNOG-mapper	1305708.M9Q2I2_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0043781_32	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0043781_32	dbAPIS	APIS043	NA	NA
UHGV-0043781_32	Structural annotation	PF13876	NA	NA
UHGV-0043781_33	PHROG	phrog_32767	NA	unknown function
UHGV-0043781_35	PHROG	phrog_1233	NA	unknown function
UHGV-0043781_35	eggNOG-mapper	1280692.AUJL01000004_gene849	NA	NA
UHGV-0043781_36	PHROG	phrog_34548	NA	unknown function
UHGV-0043781_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0043781_37	UniRef90	UniRef90_A0A336Q541	Minor capsid 2 protein	NA
UHGV-0043781_37	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0043781_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0043781_37	COG	COG2369	NA	NA
UHGV-0043781_37	Structural annotation	PF06152	NA	NA
UHGV-0043781_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0043781_38	UniRef90	UniRef90_A0A336Q6E8	Bacteriophage portal protein, SPP1 Gp6-like protein	NA
UHGV-0043781_38	eggNOG-mapper	1292035.H476_1018	NA	NA
UHGV-0043781_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0043781_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043781_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0043781_39	UniRef90	UniRef90_A0A133NAI4	Phage terminase, large subunit, PBSX family	NA
UHGV-0043781_39	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0043781_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0043781_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043781_39	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0043781_40	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0043781_40	UniRef90	UniRef90_B1BWD0	NA	NA
UHGV-0043781_40	eggNOG-mapper	1305708.M9Q2K7_9CAUD	NA	NA
UHGV-0043781_40	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0043781_40	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0043781_40	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0043781_41	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0043781_41	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0043781_41	UniRef90	UniRef90_B1BW24	Transposon Tn21 resolvase	NA
UHGV-0043781_41	eggNOG-mapper	1305708.M9Q1K0_9CAUD	Resolvase, N terminal domain	NA
UHGV-0043781_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0043781_41	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0043781_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0043781_42	PHROG	phrog_216	integrase	integration and excision
UHGV-0043781_42	UniRef90	UniRef90_A0A133NAJ9	Site-specific recombinase, phage integrase family	NA
UHGV-0043781_42	eggNOG-mapper	1211817.CCAT010000003_gene246	Phage integrase family	NA
UHGV-0043781_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043781_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043781_42	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0043781_43	PHROG	phrog_9628	NA	unknown function
UHGV-0043781_43	UniRef90	UniRef90_A0A316M1R4	Helix-turn-helix domain containing protein	NA
UHGV-0043781_43	eggNOG-mapper	1414720.CBYM010000001_gene690	NA	NA
UHGV-0043781_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043781_44	UniRef90	UniRef90_B1BWC6	Probable sigma factor	NA
UHGV-0043781_44	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0043781_45	PHROG	phrog_21553	NA	unknown function
UHGV-0043781_45	UniRef90	UniRef90_B1BWC5	Putative two-component sensor histidine kinase	NA
UHGV-0043781_47	PHROG	phrog_17842	NA	unknown function
UHGV-0043781_48	PHROG	phrog_3930	NA	unknown function
UHGV-0043781_48	eggNOG-mapper	536232.CLM_2546	NA	NA
UHGV-0043781_49	PHROG	phrog_19920	NA	unknown function
UHGV-0043781_51	PHROG	phrog_33682	NA	unknown function
UHGV-0043781_51	eggNOG-mapper	198094.BA_0453	NA	NA
UHGV-0043781_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043781_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043781_52	UniRef90	UniRef90_A0A133N211	Single-stranded DNA-binding protein	NA
UHGV-0043781_52	eggNOG-mapper	195103.CPF_2977	Single-stranded DNA-binding protein	NA
UHGV-0043781_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043781_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043781_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043781_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043781_52	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0043781_53	PHROG	phrog_4875	NA	unknown function
UHGV-0043781_54	PHROG	phrog_22274	NA	unknown function
UHGV-0043781_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0043781_55	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0043781_55	UniRef90	UniRef90_B1BWB8	NA	NA
UHGV-0043781_55	eggNOG-mapper	1305708.M9Q1J4_9CAUD	IstB-like ATP binding protein	NA
UHGV-0043781_55	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0043781_55	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0043781_56	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043781_56	UniRef90	UniRef90_A0A336Q6K6	NA	NA
UHGV-0043781_56	eggNOG-mapper	1033737.CAEV01000007_gene2594	NA	NA
UHGV-0043781_56	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0043781_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0043781_57	PHROG	phrog_25467	NA	unknown function
UHGV-0043781_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043781_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043781_58	UniRef90	UniRef90_A0A133N362	DNA-binding helix-turn-helix protein	NA
UHGV-0043781_58	eggNOG-mapper	999411.HMPREF1092_03286	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043781_58	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0043781_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043781_58	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA