UHGV-0043841

Genome information

vOTU vOTU-020303

Genome length 30,766 bps

CDS count 49

Completeness 87.63% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043841
vOTU ID	vOTU-020303
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_1599
BioSample	NA
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.87
Jumbo phage	No

Genome content
Genome length	30,766 bps
GC content	42.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.79%
Average CDS length	573.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043841_2	Structural annotation	PF00041	NA	NA
UHGV-0043841_3	UniRef90	UniRef90_UPI00156FC490	SGNH/GDSL hydrolase family protein	NA
UHGV-0043841_3	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0043841_3	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0043841_5	PHROG	phrog_14030	NA	unknown function
UHGV-0043841_5	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0043841_5	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0043841_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0043841_5	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0043841_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0043841_5	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0043841_6	PHROG	phrog_13289	tail protein	tail
UHGV-0043841_6	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0043841_6	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0043841_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0043841_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043841_6	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0043841_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043841_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043841_7	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0043841_7	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0043841_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0043841_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043841_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0043841_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0043841_8	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0043841_8	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0043841_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0043841_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0043841_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0043841_11	PHROG	phrog_88	major tail protein	tail
UHGV-0043841_11	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0043841_11	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0043841_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043841_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0043841_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043841_12	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0043841_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0043841_12	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0043841_13	Structural annotation	PF05657	NA	NA
UHGV-0043841_14	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0043841_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0043841_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043841_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043841_16	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0043841_16	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0043841_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043841_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043841_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0043841_16	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0043841_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0043841_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0043841_17	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0043841_17	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0043841_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0043841_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0043841_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0043841_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043841_18	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0043841_18	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0043841_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043841_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043841_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043841_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043841_19	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0043841_19	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0043841_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043841_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043841_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043841_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0043841_20	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0043841_20	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0043841_20	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0043841_20	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0043841_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043841_22	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0043841_22	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0043841_22	Pfam	PF07374	NA	DUF1492
UHGV-0043841_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0043841_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0043841_23	PHROG	phrog_15198	NA	unknown function
UHGV-0043841_23	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0043841_23	Pfam	PF04448	NA	DUF551
UHGV-0043841_24	PHROG	phrog_8684	NA	unknown function
UHGV-0043841_24	UniRef90	UniRef90_A0A1C5X6R0	YopX protein	NA
UHGV-0043841_24	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0043841_24	Pfam	PF09643	YopX protein	YopX
UHGV-0043841_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0043841_26	PHROG	phrog_20593	NA	unknown function
UHGV-0043841_26	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0043841_27	PHROG	phrog_10714	NA	unknown function
UHGV-0043841_28	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0043841_28	UniRef90	UniRef90_UPI00189A61B2	Lar family restriction alleviation protein	NA
UHGV-0043841_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0043841_29	PHROG	phrog_924	NA	unknown function
UHGV-0043841_29	UniRef90	UniRef90_A0A893WE10	NA	NA
UHGV-0043841_29	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0043841_29	Pfam	PF04448	NA	DUF551
UHGV-0043841_29	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0043841_32	Structural annotation	PF17516, NF037951	NA	NA
UHGV-0043841_33	UniRef90	UniRef90_UPI000E4AEE34	NA	NA
UHGV-0043841_33	eggNOG-mapper	411460.RUMTOR_01556	NA	NA
UHGV-0043841_33	Pfam	PF14199	NA	DUF4317
UHGV-0043841_33	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0043841_34	PHROG	phrog_7566	NA	unknown function
UHGV-0043841_34	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0043841_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0043841_36	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0043841_36	UniRef90	UniRef90_A0A174HNH0	Probable chromosome-partitioning protein parB	NA
UHGV-0043841_36	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0043841_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043841_36	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0043841_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0043841_36	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0043841_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0043841_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0043841_37	UniRef90	UniRef90_A0A174HML3	Ribonuclease H	NA
UHGV-0043841_37	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0043841_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0043841_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0043841_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043841_38	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-0043841_38	Structural annotation	PF01446	NA	NA
UHGV-0043841_39	PHROG	phrog_3777	NA	unknown function
UHGV-0043841_39	UniRef90	UniRef90_A0A3E4GMR6	NA	NA
UHGV-0043841_39	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0043841_39	Pfam	PF12957	NA	DUF3846
UHGV-0043841_39	Structural annotation	PF12957	NA	NA
UHGV-0043841_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0043841_43	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0043841_43	UniRef90	UniRef90_A0A1C5N1M2	Phage anti-repressor protein	NA
UHGV-0043841_43	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0043841_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0043841_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0043841_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0043841_43	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0043841_44	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0043841_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0043841_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043841_46	UniRef90	UniRef90_UPI00156F4263	helix-turn-helix domain-containing protein	NA
UHGV-0043841_46	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043841_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043841_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043841_46	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0043841_48	PHROG	phrog_10934	NA	unknown function
UHGV-0043841_48	UniRef90	UniRef90_UPI0002E62F87	HIRAN domain-containing protein	NA
UHGV-0043841_48	eggNOG-mapper	565664.EFXG_02687	NA	NA
UHGV-0043841_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0043841_49	PHROG	phrog_95	integrase	integration and excision
UHGV-0043841_49	UniRef90	UniRef90_A0A1C5N2V2	Recombinase	NA
UHGV-0043841_49	eggNOG-mapper	665950.HMPREF1025_02566	Resolvase, N terminal domain	NA
UHGV-0043841_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0043841_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-0043841_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0043841_49	Structural annotation	PF07508, PF00239, PF13408, NF041201, COG1961	NA	NA