UHGV-0043860

Genome information

vOTU vOTU-019769

Genome length 31,624 bps

CDS count 41

Completeness 79.86% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043860
vOTU ID	vOTU-019769
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4112
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.93
Jumbo phage	No

Genome content
Genome length	31,624 bps
GC content	28.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.48%
Average CDS length	694.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043860_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0043860_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043860_1	UniRef90	UniRef90_UPI000933B85D	helix-turn-helix domain-containing protein	NA
UHGV-0043860_1	eggNOG-mapper	717606.PaecuDRAFT_0701	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043860_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043860_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043860_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0043860_2	PHROG	phrog_3088	amidase	lysis
UHGV-0043860_2	UniRef90	UniRef90_A0A1I3QG25	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0043860_2	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-0043860_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0043860_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0043860_2	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-0043860_3	PHROG	phrog_1129	holin	lysis
UHGV-0043860_3	UniRef90	UniRef90_UPI0005E8A3FA	phage holin family protein	NA
UHGV-0043860_3	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0043860_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0043860_3	Structural annotation	PF06946	NA	NA
UHGV-0043860_4	PHROG	phrog_689	holin	lysis
UHGV-0043860_4	UniRef90	UniRef90_A0A0B3W1G1	Hemolysin XhlA	NA
UHGV-0043860_4	eggNOG-mapper	1294142.CINTURNW_1046	Haemolysin XhlA	NA
UHGV-0043860_4	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0043860_5	PHROG	phrog_18444	NA	unknown function
UHGV-0043860_6	PHROG	phrog_16267	NA	unknown function
UHGV-0043860_6	UniRef90	UniRef90_U2NPC0	KID repeat-containing protein	NA
UHGV-0043860_6	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0043860_6	COG	COG4926	Phage-related protein	NA
UHGV-0043860_6	Structural annotation	PF14594, PF21471, NF033848, NF012201, COG3500	NA	NA
UHGV-0043860_7	PHROG	phrog_1401	NA	unknown function
UHGV-0043860_7	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0043860_7	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0043860_7	Structural annotation	PF07761	NA	NA
UHGV-0043860_8	PHROG	phrog_2566	NA	unknown function
UHGV-0043860_8	UniRef90	UniRef90_U2PXN2	Prophage pi2 protein 49	NA
UHGV-0043860_8	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0043860_9	PHROG	phrog_1194	NA	unknown function
UHGV-0043860_9	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0043860_9	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0043860_9	Pfam	PF20458	NA	DUF6711
UHGV-0043860_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0043860_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0043860_10	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0043860_10	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-0043860_10	COG	COG1511	NA	NA
UHGV-0043860_11	PHROG	phrog_3845	NA	unknown function
UHGV-0043860_11	UniRef90	UniRef90_A0A127EGV6	bPH_3 domain-containing protein	NA
UHGV-0043860_11	eggNOG-mapper	552396.HMPREF0863_04116	NA	NA
UHGV-0043860_12	PHROG	phrog_8355	NA	unknown function
UHGV-0043860_12	UniRef90	UniRef90_A0A0B3VU95	Bacteriophage Gp15 protein	NA
UHGV-0043860_12	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0043860_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0043860_12	Structural annotation	PF06854	NA	NA
UHGV-0043860_13	PHROG	phrog_8300	NA	unknown function
UHGV-0043860_13	eggNOG-mapper	1294142.CINTURNW_1036	NA	NA
UHGV-0043860_13	Structural annotation	PF06896	NA	NA
UHGV-0043860_14	PHROG	phrog_820	major tail protein	tail
UHGV-0043860_14	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0043860_14	COG	COG5492	NA	NA
UHGV-0043860_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0043860_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0043860_15	UniRef90	UniRef90_UPI00129ED4DA	minor capsid protein	NA
UHGV-0043860_15	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0043860_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0043860_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0043860_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0043860_16	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-0043860_16	eggNOG-mapper	1415775.U729_2609	NA	NA
UHGV-0043860_17	PHROG	phrog_8710	NA	unknown function
UHGV-0043860_17	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0043860_17	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0043860_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0043860_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0043860_18	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0043860_19	PHROG	phrog_1378	NA	unknown function
UHGV-0043860_19	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0043860_19	eggNOG-mapper	1415775.U729_2606	NA	NA
UHGV-0043860_19	Pfam	PF02183	Homeobox associated leucine zipper	HALZ
UHGV-0043860_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0043860_20	UniRef90	UniRef90_A0A0B3W1I1	Capsid protein	NA
UHGV-0043860_20	eggNOG-mapper	195103.CPF_0956	NA	NA
UHGV-0043860_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043860_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0043860_21	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0043860_21	eggNOG-mapper	1305708.M9Q248_9CAUD	NA	NA
UHGV-0043860_21	Structural annotation	PF10788	NA	NA
UHGV-0043860_22	PHROG	phrog_5106	NA	unknown function
UHGV-0043860_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0043860_23	UniRef90	UniRef90_UPI00129E2690	capsid protein	NA
UHGV-0043860_23	eggNOG-mapper	1305708.M9Q2F2_9CAUD	Phage minor capsid protein 2	NA
UHGV-0043860_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0043860_23	Structural annotation	PF06152	NA	NA
UHGV-0043860_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0043860_24	UniRef90	UniRef90_A0A0B3WNM7	Capsid protein	NA
UHGV-0043860_24	eggNOG-mapper	1415775.U729_2601	NA	NA
UHGV-0043860_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0043860_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043860_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0043860_25	UniRef90	UniRef90_A0A0B3VH41	Terminase	NA
UHGV-0043860_25	eggNOG-mapper	1294142.CINTURNW_1023	Phage terminase, large subunit, PBSX family	NA
UHGV-0043860_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0043860_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043860_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0043860_26	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0043860_26	UniRef90	UniRef90_A0A1S8TVM3	Phage terminase small subunit	NA
UHGV-0043860_26	eggNOG-mapper	1211817.CCAT010000007_gene1043	DNA packaging	NA
UHGV-0043860_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0043860_26	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0043860_26	COG	COG5484	NA	NA
UHGV-0043860_26	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0043860_27	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0043860_27	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0043860_27	UniRef90	UniRef90_A0A1C5Z2F2	Putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0043860_27	eggNOG-mapper	536233.CLO_0879	Resolvase, N terminal domain	NA
UHGV-0043860_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0043860_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0043860_27	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0043860_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0043860_28	PHROG	phrog_216	integrase	integration and excision
UHGV-0043860_28	UniRef90	UniRef90_A0A0B3WNN4	Integrase	NA
UHGV-0043860_28	eggNOG-mapper	457396.CSBG_01042	Phage integrase family	NA
UHGV-0043860_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0043860_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0043860_28	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0043860_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043860_29	UniRef90	UniRef90_A0A0B3VH46	Sigma70_r4 domain-containing protein	NA
UHGV-0043860_29	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0043860_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0043860_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043860_32	UniRef90	UniRef90_A0A0B3W1J4	Single-stranded DNA-binding protein	NA
UHGV-0043860_32	eggNOG-mapper	1408823.AXUS01000015_gene1419	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0043860_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043860_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0043860_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043860_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0043860_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0043860_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0043860_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0043860_34	UniRef90	UniRef90_UPI0004AF2BB0	AAA family ATPase	NA
UHGV-0043860_34	eggNOG-mapper	1476973.JMMB01000007_gene744	DnaB-like helicase N terminal domain	NA
UHGV-0043860_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0043860_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0043860_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0043860_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0043860_35	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043860_35	UniRef90	UniRef90_A0A0B3VTK9	Phg_2220_C domain-containing protein	NA
UHGV-0043860_35	eggNOG-mapper	1009370.ALO_12756	NA	NA
UHGV-0043860_35	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0043860_35	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0043860_35	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0043860_35	Structural annotation	PF09524, PF02334, TIGR02220	NA	NA
UHGV-0043860_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0043860_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0043860_38	UniRef90	UniRef90_A0A0B3VHA8	Antirepressor	NA
UHGV-0043860_38	eggNOG-mapper	1211817.CCAT010000007_gene1061	Phage antirepressor protein	NA
UHGV-0043860_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0043860_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0043860_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0043860_38	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0043860_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0043860_39	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0043860_39	UniRef90	UniRef90_A0A0B3VH52	XRE family transcriptional regulator	NA
UHGV-0043860_39	eggNOG-mapper	1151292.QEW_1743	Transcriptional	NA
UHGV-0043860_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0043860_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043860_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043860_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0043860_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043860_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043860_40	UniRef90	UniRef90_UPI0005EA5E5C	helix-turn-helix domain-containing protein	NA
UHGV-0043860_40	eggNOG-mapper	641107.CDLVIII_3391	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043860_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0043860_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043860_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043860_40	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0043860_41	PHROG	phrog_87	metallo-protease	other
UHGV-0043860_41	UniRef90	UniRef90_A0A0B3W1J9	Peptidase_M78 domain-containing protein	NA
UHGV-0043860_41	eggNOG-mapper	1408823.AXUS01000024_gene2686	IrrE N-terminal-like domain	NA
UHGV-0043860_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0043860_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0043860_41	Structural annotation	PF06114, COG2856	NA	NA