UHGV-0043867

Genome information

Genome length 34,120 bps

CDS count 49

Completeness 82.35% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043867
vOTU ID	vOTU-016000
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3582
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.69
Jumbo phage	No

Genome content
Genome length	34,120 bps
GC content	42.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.41%
Average CDS length	631.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043867_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0043867_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0043867_1	UniRef90	UniRef90_A5ZPQ0	Resolvase, N-terminal domain protein	NA
UHGV-0043867_1	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0043867_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0043867_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0043867_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0043867_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0043867_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0043867_2	UniRef90	UniRef90_A0A415L5E3	NA	NA
UHGV-0043867_2	eggNOG-mapper	553973.CLOHYLEM_07035	NA	NA
UHGV-0043867_2	Pfam	PF16729	NA	DUF5067
UHGV-0043867_3	PHROG	phrog_87	metallo-protease	other
UHGV-0043867_3	UniRef90	UniRef90_A0A414EG59	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0043867_3	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0043867_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0043867_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0043867_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0043867_4	UniRef90	UniRef90_A0A414EGB5	NA	NA
UHGV-0043867_4	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-0043867_4	Pfam	PF13711	NA	DUF4160
UHGV-0043867_5	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0043867_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043867_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0043867_6	UniRef90	UniRef90_A0A414SF05	XRE family transcriptional regulator	NA
UHGV-0043867_6	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043867_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043867_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043867_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0043867_7	UniRef90	UniRef90_A0A414SEP7	XRE family transcriptional regulator	NA
UHGV-0043867_7	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0043867_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043867_7	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0043867_8	PHROG	phrog_5765	NA	unknown function
UHGV-0043867_8	UniRef90	UniRef90_A0A414SEW2	BC1881 family protein	NA
UHGV-0043867_8	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0043867_8	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0043867_9	PHROG	phrog_3292	NA	unknown function
UHGV-0043867_9	UniRef90	UniRef90_A0A414SEZ1	KTSC domain-containing protein	NA
UHGV-0043867_9	eggNOG-mapper	926692.AZYG01000059_gene89	KTSC domain	NA
UHGV-0043867_9	Pfam	PF13619	KTSC domain	KTSC
UHGV-0043867_9	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0043867_9	Structural annotation	PF13619	NA	NA
UHGV-0043867_10	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0043867_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043867_16	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0043867_16	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0043867_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0043867_17	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0043867_17	UniRef90	UniRef90_A0A1C5RDL1	Ribonuclease H	NA
UHGV-0043867_17	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0043867_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0043867_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0043867_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0043867_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0043867_18	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-0043867_18	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0043867_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0043867_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0043867_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0043867_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0043867_19	PHROG	phrog_15077	NA	unknown function
UHGV-0043867_19	UniRef90	UniRef90_A0A1C5REH6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0043867_19	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0043867_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0043867_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0043867_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0043867_20	PHROG	phrog_17842	NA	unknown function
UHGV-0043867_21	eggNOG-mapper	610130.Closa_0727	NA	NA
UHGV-0043867_22	PHROG	phrog_7566	NA	unknown function
UHGV-0043867_22	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0043867_23	PHROG	phrog_23707	NA	unknown function
UHGV-0043867_23	UniRef90	UniRef90_UPI00156E1A02	alanine racemase	NA
UHGV-0043867_23	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-0043867_25	UniRef90	UniRef90_A0A173WN74	Sigma-70, region 4	NA
UHGV-0043867_25	Pfam	PF18024	Helix-turn-helix domain	HTH_50
UHGV-0043867_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0043867_25	Structural annotation	PF01710, NF040595	NA	NA
UHGV-0043867_26	PHROG	phrog_24490	NA	unknown function
UHGV-0043867_26	eggNOG-mapper	1235793.C809_02212	NA	NA
UHGV-0043867_27	PHROG	phrog_15198	NA	unknown function
UHGV-0043867_27	UniRef90	UniRef90_UPI000E4C0B2A	NA	NA
UHGV-0043867_27	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0043867_27	Pfam	PF04448	NA	DUF551
UHGV-0043867_28	PHROG	phrog_6568	NA	unknown function
UHGV-0043867_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043867_29	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-0043867_29	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0043867_29	Structural annotation	PF02996	NA	NA
UHGV-0043867_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0043867_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0043867_30	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-0043867_30	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0043867_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0043867_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0043867_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0043867_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0043867_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0043867_31	UniRef90	UniRef90_A0A414SEW8	Terminase	NA
UHGV-0043867_31	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0043867_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0043867_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0043867_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0043867_32	UniRef90	UniRef90_A0A1C5YZW6	Phage portal protein, putative, A118 family	NA
UHGV-0043867_32	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0043867_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0043867_33	PHROG	phrog_25639	NA	unknown function
UHGV-0043867_33	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0043867_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0043867_34	UniRef90	UniRef90_A0A414W2X3	Minor capsid protein	NA
UHGV-0043867_34	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0043867_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0043867_34	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0043867_34	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0043867_34	Structural annotation	PF06152	NA	NA
UHGV-0043867_35	PHROG	phrog_1048	NA	unknown function
UHGV-0043867_35	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-0043867_35	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0043867_35	Pfam	PF11195	NA	DUF2829
UHGV-0043867_35	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0043867_35	Structural annotation	PF11195	NA	NA
UHGV-0043867_36	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0043867_36	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0043867_36	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0043867_38	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0043867_38	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0043867_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0043867_39	UniRef90	UniRef90_A0A414W378	Phage capsid protein	NA
UHGV-0043867_39	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0043867_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0043867_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0043867_40	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0043867_41	PHROG	phrog_8710	NA	unknown function
UHGV-0043867_41	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0043867_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0043867_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0043867_42	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0043867_43	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0043867_43	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0043867_43	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0043867_43	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0043867_43	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0043867_44	PHROG	phrog_820	major tail protein	tail
UHGV-0043867_44	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0043867_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0043867_45	PHROG	phrog_8300	NA	unknown function
UHGV-0043867_45	eggNOG-mapper	585501.HMPREF6123_0828	NA	NA
UHGV-0043867_45	Structural annotation	PF06854	NA	NA
UHGV-0043867_46	PHROG	phrog_8355	NA	unknown function
UHGV-0043867_46	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0043867_46	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0043867_46	Structural annotation	PF06854	NA	NA
UHGV-0043867_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0043867_47	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0043867_47	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0043867_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0043867_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0043867_48	PHROG	phrog_1194	NA	unknown function
UHGV-0043867_48	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0043867_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0043867_49	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0043867_49	PHROG	phrog_6616	tail protein	tail
UHGV-0043867_49	UniRef90	UniRef90_A0A1C5RGI0	Peptidase S74 domain-containing protein	NA
UHGV-0043867_49	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0043867_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0043867_49	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0043867_49	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA