UHGV-0043881

Genome information

vOTU vOTU-020990

Genome length 31,839 bps

CDS count 53

Completeness 86.37% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043881
vOTU ID	vOTU-020990
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_18102
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.24
Jumbo phage	No

Genome content
Genome length	31,839 bps
GC content	57.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.95%
Average CDS length	574.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043881_1	PHROG	phrog_1066	NA	unknown function
UHGV-0043881_1	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0043881_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0043881_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043881_2	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0043881_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0043881_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043881_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043881_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043881_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0043881_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043881_3	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0043881_3	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0043881_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043881_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043881_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043881_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0043881_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0043881_4	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0043881_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0043881_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0043881_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0043881_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0043881_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043881_5	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0043881_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0043881_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043881_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043881_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0043881_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043881_6	PHROG	phrog_5223	neck protein	connector
UHGV-0043881_6	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0043881_6	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0043881_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0043881_7	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-0043881_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0043881_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0043881_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0043881_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0043881_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043881_8	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0043881_8	Structural annotation	PF05657	NA	NA
UHGV-0043881_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043881_9	Structural annotation	TIGR01725	NA	NA
UHGV-0043881_10	PHROG	phrog_88	major tail protein	tail
UHGV-0043881_10	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0043881_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0043881_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043881_10	COG	COG5492	NA	NA
UHGV-0043881_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0043881_11	Structural annotation	PF11836	NA	NA
UHGV-0043881_12	PHROG	phrog_33680	NA	unknown function
UHGV-0043881_12	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0043881_12	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0043881_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0043881_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0043881_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0043881_13	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0043881_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0043881_13	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0043881_14	PHROG	phrog_26795	NA	unknown function
UHGV-0043881_14	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0043881_14	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0043881_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0043881_15	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0043881_16	Structural annotation	PF10651	NA	NA
UHGV-0043881_17	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0043881_17	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0043881_18	PHROG	phrog_37900	NA	unknown function
UHGV-0043881_18	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0043881_18	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0043881_18	Pfam	PF19789	NA	DUF6273
UHGV-0043881_18	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0043881_18	Structural annotation	PF19789	NA	NA
UHGV-0043881_19	PHROG	phrog_29409	NA	unknown function
UHGV-0043881_21	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0043881_21	Structural annotation	PF14600	NA	NA
UHGV-0043881_24	PHROG	phrog_6918	holin	lysis
UHGV-0043881_24	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0043881_24	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0043881_24	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0043881_24	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0043881_25	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0043881_25	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0043881_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0043881_25	Structural annotation	NF033743	NA	NA
UHGV-0043881_26	Structural annotation	PF13412, MF_00674, COG1342	NA	NA
UHGV-0043881_27	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0043881_27	Structural annotation	PF10723	NA	NA
UHGV-0043881_31	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0043881_31	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0043881_32	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0043881_32	PHROG	phrog_95	integrase	integration and excision
UHGV-0043881_32	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0043881_32	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0043881_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0043881_32	Pfam	PF07508	Recombinase	Recombinase
UHGV-0043881_32	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0043881_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0043881_32	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0043881_33	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0043881_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043881_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043881_33	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0043881_34	PHROG	phrog_10292	NA	unknown function
UHGV-0043881_34	UniRef90	UniRef90_A0A416W984	TM2 domain-containing protein	NA
UHGV-0043881_34	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0043881_34	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0043881_34	Pfam	PF05154	TM2 domain	TM2
UHGV-0043881_34	COG	COG2314	NA	NA
UHGV-0043881_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043881_36	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0043881_36	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0043881_36	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0043881_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043881_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043881_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0043881_39	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0043881_39	Structural annotation	PF12286	NA	NA
UHGV-0043881_40	Structural annotation	PF10548	NA	NA
UHGV-0043881_43	Structural annotation	NF041247	NA	NA
UHGV-0043881_44	Structural annotation	PF05082	NA	NA
UHGV-0043881_47	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0043881_47	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0043881_47	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0043881_47	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0043881_47	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0043881_47	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0043881_47	COG	COG0863	DNA modification methylase	NA
UHGV-0043881_47	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0043881_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0043881_49	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0043881_49	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0043881_49	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0043881_49	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0043881_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0043881_49	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0043881_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0043881_49	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0043881_50	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0043881_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0043881_50	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0043881_50	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0043881_50	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0043881_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0043881_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0043881_50	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0043881_51	PHROG	phrog_7704	NA	unknown function
UHGV-0043881_51	UniRef90	UniRef90_UPI000F636DD2	NA	NA
UHGV-0043881_51	Pfam	PF04448	NA	DUF551
UHGV-0043881_51	Structural annotation	NF041588	NA	NA
UHGV-0043881_52	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0043881_52	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0043881_52	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0043881_52	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0043881_52	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0043881_52	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0043881_52	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0043881_53	PHROG	phrog_3136	NA	unknown function
UHGV-0043881_53	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0043881_53	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0043881_53	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0043881_53	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA