UHGV-0043976

Genome information

Genome length 20,796 bps

CDS count 32

Completeness 51.97% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043976
vOTU ID	vOTU-037209
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_1251
BioSample	SAMD00036364
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.83
Jumbo phage	No

Genome content
Genome length	20,796 bps
GC content	50.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.23%
Average CDS length	609.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043976_1	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043976_1	UniRef90	UniRef90_P49861	Major capsid protein	NA
UHGV-0043976_1	eggNOG-mapper	1147158.K7PJR8_9CAUD	peptidase activity	NA
UHGV-0043976_1	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043976_1	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043976_1	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043976_2	KOfam	K06904	NA	NA
UHGV-0043976_2	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0043976_2	UniRef90	UniRef90_P49860	Prohead protease	NA
UHGV-0043976_2	eggNOG-mapper	1147158.K7PKL4_9CAUD	peptidase activity	NA
UHGV-0043976_2	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0043976_2	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0043976_2	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0043976_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043976_3	UniRef90	UniRef90_P49859	Portal protein	NA
UHGV-0043976_3	eggNOG-mapper	10742.Q9MCV6_BPHK0	Phage portal protein	NA
UHGV-0043976_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043976_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0043976_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043976_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043976_4	UniRef90	UniRef90_K7P849	Terminase large subunit	NA
UHGV-0043976_4	eggNOG-mapper	1147158.K7PLY2_9CAUD	Phage Terminase	NA
UHGV-0043976_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043976_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043976_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0043976_5	PHROG	phrog_5601	terminase small subunit	head and packaging
UHGV-0043976_5	UniRef90	UniRef90_K7P7C0	Terminase small subunit	NA
UHGV-0043976_5	eggNOG-mapper	10742.Q77WA1_BPHK0	NA	NA
UHGV-0043976_6	PHROG	phrog_10282	NA	unknown function
UHGV-0043976_6	UniRef90	UniRef90_A0A514V710	Serine acetyltransferase	NA
UHGV-0043976_6	eggNOG-mapper	1147143.K7P7A6_9CAUD	NA	NA
UHGV-0043976_7	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043976_7	UniRef90	UniRef90_K7P7P6	HNHc domain-containing protein	NA
UHGV-0043976_7	eggNOG-mapper	1147157.K7PHM4_9CAUD	HNH endonuclease	NA
UHGV-0043976_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0043976_8	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0043976_8	UniRef90	UniRef90_A0A7I7FZX7	Bacteriophage protein	NA
UHGV-0043976_8	eggNOG-mapper	432200.K7P7D2_9CAUD	transferase activity	NA
UHGV-0043976_8	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0043976_9	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0043976_9	UniRef90	UniRef90_A0A8F3W3I2	Glycosyltransferase family 2 protein	NA
UHGV-0043976_9	eggNOG-mapper	1147158.K7PKP3_9CAUD	transferase activity	NA
UHGV-0043976_9	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0043976_11	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0043976_11	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-0043976_12	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0043976_12	PHROG	phrog_12853	NA	unknown function
UHGV-0043976_12	UniRef90	UniRef90_A0A0V9JGI2	PG_binding_3 domain-containing protein	NA
UHGV-0043976_12	eggNOG-mapper	399742.Ent638_1027	Predicted Peptidoglycan domain	NA
UHGV-0043976_12	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0043976_12	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0043976_12	COG	COG3926	Lysozyme family protein	NA
UHGV-0043976_12	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0043976_13	PHROG	phrog_217	holin	lysis
UHGV-0043976_13	UniRef90	UniRef90_A0A7Z8BXT8	Membrane protein	NA
UHGV-0043976_13	eggNOG-mapper	393305.YE1814	Putative 3TM holin, Phage_holin_3	NA
UHGV-0043976_13	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0043976_14	PHROG	phrog_198	holin	lysis
UHGV-0043976_14	UniRef90	UniRef90_UPI001C643637	phage holin family protein	NA
UHGV-0043976_14	eggNOG-mapper	667121.ET1_08_00980	Putative phage holin	NA
UHGV-0043976_14	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0043976_14	Structural annotation	PF16931	NA	NA
UHGV-0043976_15	PHROG	phrog_8257	NA	unknown function
UHGV-0043976_15	UniRef90	UniRef90_M7CV74	Phage membrane protein	NA
UHGV-0043976_15	eggNOG-mapper	1288826.MSNKSG1_02384	NA	NA
UHGV-0043976_16	PHROG	phrog_16499	NA	unknown function
UHGV-0043976_16	UniRef90	UniRef90_A0A6C7HRG5	Exported phage protein	NA
UHGV-0043976_16	eggNOG-mapper	1288826.MSNKSG1_02379	NA	NA
UHGV-0043976_17	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0043976_17	UniRef90	UniRef90_A0A7W3CAE7	Antitermination protein	NA
UHGV-0043976_17	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0043976_17	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0043976_17	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0043976_17	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0043976_17	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0043976_18	PHROG	phrog_33270	NA	unknown function
UHGV-0043976_19	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0043976_19	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0043976_19	UniRef90	UniRef90_R4YHI6	SF4 helicase domain-containing protein	NA
UHGV-0043976_19	eggNOG-mapper	1397284.AYMN01000067_gene2197	Toprim-like	NA
UHGV-0043976_19	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0043976_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-0043976_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0043976_19	Structural annotation	PF03796, PF01807, PF12965, MF_04154, NF040583, COG0305	NA	NA
UHGV-0043976_21	PHROG	phrog_25210	NA	unknown function
UHGV-0043976_21	UniRef90	UniRef90_A0A764W9P3	DNA-binding protein	NA
UHGV-0043976_21	eggNOG-mapper	155864.EDL933_1254	Protein conserved in bacteria	NA
UHGV-0043976_21	COG	COG3756	NA	NA
UHGV-0043976_22	PHROG	phrog_1343	NA	unknown function
UHGV-0043976_22	UniRef90	UniRef90_A0A4U6HP49	NA	NA
UHGV-0043976_22	eggNOG-mapper	932213.SPM24T3_09701	NA	NA
UHGV-0043976_22	Pfam	PF13973	NA	DUF4222
UHGV-0043976_22	Structural annotation	PF13973, MF_00667	NA	NA
UHGV-0043976_23	UniRef90	UniRef90_A0A7W3GUI0	Transcriptional regulator	NA
UHGV-0043976_23	eggNOG-mapper	406818.XBJ1_3974	NA	NA
UHGV-0043976_23	Structural annotation	PF01381, NF041677, COG4197	NA	NA
UHGV-0043976_24	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0043976_24	PHROG	phrog_6201	NA	unknown function
UHGV-0043976_24	UniRef90	UniRef90_A0A6M1DMY1	Helix-turn-helix transcriptional regulator	NA
UHGV-0043976_24	eggNOG-mapper	716541.ECL_02713	phage repressor	NA
UHGV-0043976_24	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0043976_24	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0043976_24	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0043976_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0043976_25	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0043976_25	UniRef90	UniRef90_A0A837F7Q1	HTH cro/C1-type domain-containing protein	NA
UHGV-0043976_25	eggNOG-mapper	1423734.JCM14202_2731	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043976_25	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0043976_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0043976_26	PHROG	phrog_6201	NA	unknown function
UHGV-0043976_26	UniRef90	UniRef90_F5RYZ5	S24 family peptidase	NA
UHGV-0043976_26	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0043976_26	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0043976_26	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0043976_27	PHROG	phrog_8959	NA	unknown function
UHGV-0043976_27	Structural annotation	TIGR01280	NA	NA
UHGV-0043976_28	PHROG	phrog_1737	NA	unknown function
UHGV-0043976_28	eggNOG-mapper	716541.ECL_02715	NA	NA
UHGV-0043976_28	Structural annotation	PF17345	NA	NA
UHGV-0043976_29	PHROG	phrog_1525	NA	unknown function
UHGV-0043976_29	eggNOG-mapper	371042.NG99_17025	NA	NA
UHGV-0043976_30	PHROG	phrog_1886	NA	unknown function
UHGV-0043976_30	eggNOG-mapper	716541.ECL_02716	NA	NA
UHGV-0043976_31	PHROG	phrog_1515	NA	unknown function
UHGV-0043976_31	UniRef90	UniRef90_A0A8G2A1K7	2-polyprenylphenol hydroxylase related flavodoxin oxidoreductase	NA
UHGV-0043976_31	eggNOG-mapper	716541.ECL_02717	NA	NA
UHGV-0043976_31	Structural annotation	PF17345	NA	NA
UHGV-0043976_32	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0043976_32	UniRef90	UniRef90_A0A0F6TV00	ORF6N domain-containing protein	NA
UHGV-0043976_32	eggNOG-mapper	1197719.A464_2045	ORF6N domain	NA
UHGV-0043976_32	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0043976_32	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA