UHGV-0043977

Genome information

Genome length 32,281 bps

CDS count 46

Completeness 77.70% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0043977
vOTU ID	vOTU-036181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_1249
BioSample	SAMD00036364
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.82
Jumbo phage	No

Genome content
Genome length	32,281 bps
GC content	41.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.34%
Average CDS length	637.11 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0043977_1	UniRef90	UniRef90_A0A2N5NUM8	DNA-binding protein	NA
UHGV-0043977_1	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0043977_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043977_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043977_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0043977_2	PHROG	phrog_14088	NA	unknown function
UHGV-0043977_2	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0043977_2	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0043977_3	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0043977_3	UniRef90	UniRef90_A0A415ZXZ0	NA	NA
UHGV-0043977_3	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0043977_3	Structural annotation	COG2250	NA	NA
UHGV-0043977_6	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0043977_6	UniRef90	UniRef90_R6NXT3	HTH cro/C1-type domain-containing protein	NA
UHGV-0043977_6	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0043977_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0043977_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0043977_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0043977_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0043977_9	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0043977_9	Structural annotation	PF01446	NA	NA
UHGV-0043977_10	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0043977_10	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0043977_10	UniRef90	UniRef90_R5TR44	RNase H type-1 domain-containing protein	NA
UHGV-0043977_10	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0043977_10	Pfam	PF00075	RNase H	RNase_H
UHGV-0043977_10	COG	COG0328	Ribonuclease HI	NA
UHGV-0043977_10	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0043977_11	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0043977_11	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0043977_11	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0043977_12	PHROG	phrog_8470	NA	unknown function
UHGV-0043977_12	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0043977_12	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0043977_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0043977_12	Structural annotation	PF14284	NA	NA
UHGV-0043977_13	PHROG	phrog_15077	NA	unknown function
UHGV-0043977_13	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0043977_13	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0043977_13	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0043977_14	PHROG	phrog_7566	NA	unknown function
UHGV-0043977_14	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0043977_15	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0043977_16	PHROG	phrog_24386	NA	unknown function
UHGV-0043977_16	eggNOG-mapper	1235799.C818_04203	COG NOG28949 non supervised orthologous group	NA
UHGV-0043977_16	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0043977_16	Structural annotation	TIGR01689	NA	NA
UHGV-0043977_17	PHROG	phrog_26861	NA	unknown function
UHGV-0043977_17	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0043977_17	eggNOG-mapper	1232447.BAHW02000009_gene370	Single-strand binding protein family	NA
UHGV-0043977_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0043977_17	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0043977_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0043977_17	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0043977_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0043977_21	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0043977_21	Structural annotation	PF02996	NA	NA
UHGV-0043977_23	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0043977_23	eggNOG-mapper	658088.HMPREF0987_01711	NA	NA
UHGV-0043977_23	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0043977_24	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0043977_24	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0043977_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0043977_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0043977_25	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0043977_25	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0043977_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0043977_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0043977_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0043977_26	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-0043977_26	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0043977_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0043977_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0043977_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0043977_27	UniRef90	UniRef90_A0A2N5NUK9	Terminase	NA
UHGV-0043977_27	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0043977_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0043977_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0043977_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0043977_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0043977_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0043977_28	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0043977_28	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0043977_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0043977_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0043977_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0043977_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0043977_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0043977_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0043977_29	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0043977_29	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0043977_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0043977_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0043977_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0043977_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0043977_30	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0043977_30	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0043977_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0043977_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0043977_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0043977_30	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0043977_31	PHROG	phrog_749	NA	unknown function
UHGV-0043977_31	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0043977_32	PHROG	phrog_19734	NA	unknown function
UHGV-0043977_32	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0043977_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0043977_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0043977_33	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0043977_33	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-0043977_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0043977_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0043977_34	PHROG	phrog_78	tail terminator	connector
UHGV-0043977_34	eggNOG-mapper	483218.BACPEC_01313	NA	NA
UHGV-0043977_34	Structural annotation	PF20765	NA	NA
UHGV-0043977_35	PHROG	phrog_88	major tail protein	tail
UHGV-0043977_35	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0043977_35	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0043977_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0043977_36	PHROG	phrog_709	NA	unknown function
UHGV-0043977_36	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0043977_36	Structural annotation	PF11836	NA	NA
UHGV-0043977_37	PHROG	phrog_3033	NA	unknown function
UHGV-0043977_37	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0043977_37	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0043977_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0043977_38	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-0043977_38	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0043977_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0043977_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0043977_38	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0043977_38	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0043977_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0043977_39	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0043977_39	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0043977_39	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0043977_39	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0043977_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0043977_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0043977_40	PHROG	phrog_13289	tail protein	tail
UHGV-0043977_40	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-0043977_40	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0043977_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0043977_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0043977_40	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0043977_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0043977_41	PHROG	phrog_14030	NA	unknown function
UHGV-0043977_41	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0043977_41	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0043977_41	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0043977_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0043977_41	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0043977_42	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0043977_42	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0043977_42	UniRef90	UniRef90_A0A843HZK1	SGNH_hydro domain-containing protein	NA
UHGV-0043977_42	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0043977_42	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0043977_44	PHROG	phrog_1863	NA	unknown function
UHGV-0043977_44	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0043977_45	PHROG	phrog_1129	holin	lysis
UHGV-0043977_45	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0043977_45	eggNOG-mapper	476272.RUMHYD_03138	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0043977_45	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0043977_45	Structural annotation	PF16079	NA	NA
UHGV-0043977_46	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0043977_46	PHROG	phrog_670	endolysin	lysis
UHGV-0043977_46	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0043977_46	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0043977_46	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0043977_46	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA