UHGV-0044071

Genome information

Genome length 23,350 bps

CDS count 41

Completeness 55.38% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044071
vOTU ID	vOTU-036225
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_22268
BioSample	SAMEA2042736
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.23
Jumbo phage	No

Genome content
Genome length	23,350 bps
GC content	51.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.11%
Average CDS length	541.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044071_2	PHROG	phrog_1194	NA	unknown function
UHGV-0044071_2	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0044071_2	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0044071_2	Pfam	PF20458	NA	DUF6711
UHGV-0044071_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0044071_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0044071_3	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0044071_3	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0044071_3	COG	COG1511	NA	NA
UHGV-0044071_3	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0044071_4	PHROG	phrog_706	NA	unknown function
UHGV-0044071_4	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0044071_4	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0044071_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0044071_4	Structural annotation	PF06854	NA	NA
UHGV-0044071_5	PHROG	phrog_11299	NA	unknown function
UHGV-0044071_5	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0044071_5	Structural annotation	PF10666	NA	NA
UHGV-0044071_6	PHROG	phrog_3099	NA	unknown function
UHGV-0044071_6	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0044071_6	Structural annotation	TIGR02126	NA	NA
UHGV-0044071_7	PHROG	phrog_3266	tail completion	connector
UHGV-0044071_7	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0044071_7	Structural annotation	PF12691	NA	NA
UHGV-0044071_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0044071_8	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0044071_8	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0044071_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0044071_8	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0044071_9	PHROG	phrog_3366	NA	unknown function
UHGV-0044071_9	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0044071_9	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0044071_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0044071_10	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0044071_11	PHROG	phrog_212	major head protein	head and packaging
UHGV-0044071_11	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0044071_11	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0044071_11	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0044071_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0044071_12	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0044071_12	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0044071_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0044071_12	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0044071_13	PHROG	phrog_1233	NA	unknown function
UHGV-0044071_13	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0044071_13	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0044071_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0044071_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0044071_14	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0044071_14	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0044071_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044071_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0044071_14	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0044071_16	UniRef90	UniRef90_UPI000F0512BB	CopG family transcriptional regulator	NA
UHGV-0044071_16	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0044071_16	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0044071_18	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0044071_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0044071_19	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0044071_19	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0044071_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0044071_19	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0044071_19	COG	COG2369	NA	NA
UHGV-0044071_19	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0044071_21	PHROG	phrog_8680	NA	unknown function
UHGV-0044071_21	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0044071_21	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0044071_21	Pfam	PF14386	NA	DUF4417
UHGV-0044071_21	Structural annotation	PF14386	NA	NA
UHGV-0044071_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0044071_23	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0044071_23	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0044071_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0044071_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0044071_24	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044071_24	UniRef90	UniRef90_A0A3E2U4F6	AP2 domain-containing protein	NA
UHGV-0044071_24	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0044071_24	Structural annotation	PF00847	NA	NA
UHGV-0044071_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0044071_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0044071_25	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0044071_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0044071_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0044071_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0044071_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0044071_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0044071_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0044071_26	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0044071_26	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0044071_26	Structural annotation	PF04218, COG3677	NA	NA
UHGV-0044071_27	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0044071_27	PHROG	phrog_21201	DNA methyltransferase	other
UHGV-0044071_27	UniRef90	UniRef90_UPI001C033A7E	N-6 DNA methylase	NA
UHGV-0044071_27	eggNOG-mapper	261292.Nit79A3_3459	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0044071_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0044071_27	Structural annotation	PF20473, NF041658	NA	NA
UHGV-0044071_29	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0044071_29	Structural annotation	TIGR01636	NA	NA
UHGV-0044071_30	eggNOG-mapper	742740.HMPREF9474_01679	MT-A70	NA
UHGV-0044071_30	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0044071_31	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0044071_32	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0044071_32	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0044071_32	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0044071_34	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0044071_34	UniRef90	UniRef90_UPI001A9BD7A0	DNA cytosine methyltransferase	NA
UHGV-0044071_34	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0044071_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044071_35	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0044071_35	UniRef90	UniRef90_A0A661CSC3	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0044071_35	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0044071_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044071_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044071_38	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0044071_38	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0044071_38	Pfam	PF06356	NA	DUF1064
UHGV-0044071_38	Structural annotation	PF06356	NA	NA
UHGV-0044071_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0044071_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0044071_40	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0044071_40	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0044071_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0044071_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0044071_40	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0044071_41	UniRef90	UniRef90_K1SHG6	Site-specific recombinase	NA
UHGV-0044071_41	eggNOG-mapper	742738.HMPREF9460_03839	NA	NA
UHGV-0044071_41	Pfam	PF14287	NA	DUF4368
UHGV-0044071_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA