UHGV-0044104

Genome information

Genome length 38,576 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9668

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044104
vOTU ID	vOTU-062548
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2900
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9668
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.23
Jumbo phage	No

Genome content
Genome length	38,576 bps
GC content	27.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.70%
Average CDS length	518.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044104_3	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0044104_3	UniRef90	UniRef90_X8HYR5	PF07087 family protein	NA
UHGV-0044104_3	eggNOG-mapper	457405.FSDG_01608	NA	NA
UHGV-0044104_3	Pfam	PF07087	NA	DUF1353
UHGV-0044104_3	Structural annotation	PF07087	NA	NA
UHGV-0044104_4	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0044104_4	PHROG	phrog_465	endolysin	lysis
UHGV-0044104_4	UniRef90	UniRef90_A0A140PSA5	Peptidase_M15_4 domain-containing protein	NA
UHGV-0044104_4	eggNOG-mapper	457405.FSDG_01607	NA	NA
UHGV-0044104_4	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0044104_4	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0044104_4	Structural annotation	PF02557, NF000380, COG1876	NA	NA
UHGV-0044104_5	UniRef90	UniRef90_A0A2D3LVL5	Penicillin-binding protein	NA
UHGV-0044104_5	eggNOG-mapper	457405.FSDG_01606	NA	NA
UHGV-0044104_5	Structural annotation	PF14301	NA	NA
UHGV-0044104_7	PHROG	phrog_23632	NA	unknown function
UHGV-0044104_7	UniRef90	UniRef90_UPI001D03FBE5	pyocin knob domain-containing protein	NA
UHGV-0044104_7	eggNOG-mapper	457405.FSDG_01604	NA	NA
UHGV-0044104_8	PHROG	phrog_6277	NA	unknown function
UHGV-0044104_8	eggNOG-mapper	457405.FSDG_01603	NA	NA
UHGV-0044104_8	Structural annotation	PF11041, COG4385	NA	NA
UHGV-0044104_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0044104_9	UniRef90	UniRef90_A0A140PRF4	Baseplate_J domain-containing protein	NA
UHGV-0044104_9	eggNOG-mapper	457405.FSDG_01602	Baseplate J-like protein	NA
UHGV-0044104_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0044104_9	COG	COG3299	NA	NA
UHGV-0044104_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0044104_10	eggNOG-mapper	457405.FSDG_01601	NA	NA
UHGV-0044104_10	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0044104_11	UniRef90	UniRef90_A0A0S2ZDV9	Gp138_N domain-containing protein	NA
UHGV-0044104_11	eggNOG-mapper	457405.FSDG_01600	Baseplate assembly protein	NA
UHGV-0044104_11	Pfam	PF18352	NA	Gp138_N
UHGV-0044104_11	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0044104_11	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0044104_12	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0044104_12	eggNOG-mapper	457405.FSDG_01599	NA	NA
UHGV-0044104_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0044104_13	eggNOG-mapper	457405.FSDG_01598	NA	NA
UHGV-0044104_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0044104_14	UniRef90	UniRef90_A0A140PS96	Rha family phage regulatory protein	NA
UHGV-0044104_14	eggNOG-mapper	457405.FSDG_01597	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0044104_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0044104_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0044104_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0044104_15	UniRef90	UniRef90_A0A5B6PC39	Ribbon-helix-helix domain-containing protein	NA
UHGV-0044104_15	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0044104_16	PHROG	phrog_817	tail fiber protein	tail
UHGV-0044104_16	eggNOG-mapper	457405.FSDG_01595	NA	NA
UHGV-0044104_16	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0044104_16	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0044104_17	PHROG	phrog_7972	NA	unknown function
UHGV-0044104_17	eggNOG-mapper	457405.FSDG_01594	NA	NA
UHGV-0044104_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0044104_18	eggNOG-mapper	457405.FSDG_01592	NA	NA
UHGV-0044104_19	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0044104_19	eggNOG-mapper	457405.FSDG_01591	NA	NA
UHGV-0044104_19	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0044104_20	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0044104_20	UniRef90	UniRef90_J6H019	PF11863 domain protein	NA
UHGV-0044104_20	eggNOG-mapper	457405.FSDG_01590	NA	NA
UHGV-0044104_20	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0044104_21	eggNOG-mapper	457405.FSDG_01589	NA	NA
UHGV-0044104_21	Structural annotation	PF09646	NA	NA
UHGV-0044104_22	eggNOG-mapper	457405.FSDG_01588	NA	NA
UHGV-0044104_22	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0044104_23	PHROG	phrog_222	tail protein	tail
UHGV-0044104_23	eggNOG-mapper	457405.FSDG_01587	NA	NA
UHGV-0044104_24	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0044104_24	eggNOG-mapper	457405.FSDG_01586	NA	NA
UHGV-0044104_24	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0044104_25	PHROG	phrog_267	major head protein	head and packaging
UHGV-0044104_25	UniRef90	UniRef90_UPI0012397DD9	coat protein	NA
UHGV-0044104_25	eggNOG-mapper	457405.FSDG_01585	P22 coat protein-protein 5 domain protein	NA
UHGV-0044104_25	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0044104_26	UniRef90	UniRef90_UPI0007899FBF	phage scaffolding protein	NA
UHGV-0044104_26	eggNOG-mapper	457405.FSDG_01584	NA	NA
UHGV-0044104_27	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0044104_27	UniRef90	UniRef90_A0A140PV47	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0044104_27	eggNOG-mapper	457405.FSDG_01583	Phage Mu protein F like protein	NA
UHGV-0044104_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0044104_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0044104_27	COG	COG2369	NA	NA
UHGV-0044104_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0044104_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0044104_28	eggNOG-mapper	457405.FSDG_01582	NA	NA
UHGV-0044104_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044104_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0044104_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0044104_29	UniRef90	UniRef90_A0A140PRD1	PBSX family phage terminase, large subunit	NA
UHGV-0044104_29	eggNOG-mapper	457405.FSDG_01581	Terminase RNAseH like domain	NA
UHGV-0044104_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0044104_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0044104_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0044104_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0044104_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0044104_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0044104_30	UniRef90	UniRef90_UPI000687463E	transposase	NA
UHGV-0044104_30	eggNOG-mapper	457405.FSDG_01580	transposase activity	NA
UHGV-0044104_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0044104_30	Structural annotation	PF07141	NA	NA
UHGV-0044104_31	KOfam	K24451	zim; modification methylase	NA
UHGV-0044104_31	PHROG	phrog_12517	NA	unknown function
UHGV-0044104_31	UniRef90	UniRef90_A0A140PWM7	ParB domain-containing protein	NA
UHGV-0044104_31	eggNOG-mapper	457405.FSDG_01579	N-4 methylation of cytosine	NA
UHGV-0044104_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0044104_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0044104_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0044104_31	COG	COG0863	DNA modification methylase	NA
UHGV-0044104_31	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0044104_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0044104_36	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044104_36	UniRef90	UniRef90_A0A0M4RW32	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0044104_36	eggNOG-mapper	457405.FSDG_01574	Endodeoxyribonuclease RusA	NA
UHGV-0044104_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0044104_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0044104_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0044104_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0044104_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0044104_38	UniRef90	UniRef90_A0A140PSY7	SF4 helicase domain-containing protein	NA
UHGV-0044104_38	eggNOG-mapper	457405.FSDG_01572	DnaB-like helicase C terminal domain	NA
UHGV-0044104_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0044104_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0044104_38	Structural annotation	PF03796, MF_04154, NF005240, COG0305	NA	NA
UHGV-0044104_39	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044104_39	UniRef90	UniRef90_UPI001D03E040	helix-turn-helix domain-containing protein	NA
UHGV-0044104_39	eggNOG-mapper	457405.FSDG_01571	Helix-turn-helix domain	NA
UHGV-0044104_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0044104_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0044104_39	Structural annotation	PF13730, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-0044104_40	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0044104_40	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0044104_40	UniRef90	UniRef90_A0A140PT81	Methyltransferase	NA
UHGV-0044104_40	eggNOG-mapper	457405.FSDG_01570	DNA methylase	NA
UHGV-0044104_40	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0044104_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0044104_40	COG	COG0863	DNA modification methylase	NA
UHGV-0044104_40	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0044104_41	PHROG	phrog_585	NA	unknown function
UHGV-0044104_41	UniRef90	UniRef90_UPI001B8C8842	NA	NA
UHGV-0044104_41	eggNOG-mapper	457405.FSDG_01569	NA	NA
UHGV-0044104_41	Pfam	PF10711	NA	DUF2513
UHGV-0044104_41	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0044104_45	PHROG	phrog_3707	membrane-flanked domain	moron, auxiliary metabolic gene and host takeover
UHGV-0044104_45	UniRef90	UniRef90_A0A140PUD5	bPH_2 domain-containing protein	NA
UHGV-0044104_45	eggNOG-mapper	469604.HMPREF0946_01104	Bacterial PH domain	NA
UHGV-0044104_45	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-0044104_45	COG	COG3428	NA	NA
UHGV-0044104_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0044104_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0044104_46	UniRef90	UniRef90_A0A140PTB0	HTH cro/C1-type domain-containing protein	NA
UHGV-0044104_46	eggNOG-mapper	457405.FSDG_01564	Peptidase S24-like	NA
UHGV-0044104_46	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0044104_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0044104_46	COG	COG1426	NA	NA
UHGV-0044104_46	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0044104_47	UniRef90	UniRef90_UPI00117AA818	Zn-dependent oligopeptidase	NA
UHGV-0044104_49	PHROG	phrog_17986	NA	unknown function
UHGV-0044104_49	eggNOG-mapper	469604.HMPREF0946_02147	NA	NA
UHGV-0044104_54	PHROG	phrog_14970	NA	unknown function
UHGV-0044104_54	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0044104_54	eggNOG-mapper	457405.FSDG_01558	DNA recombination	NA
UHGV-0044104_54	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0044104_54	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0044104_55	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0044104_55	UniRef90	UniRef90_UPI0007888E09	siphovirus Gp157 family protein	NA
UHGV-0044104_55	eggNOG-mapper	457405.FSDG_01557	Siphovirus Gp157	NA
UHGV-0044104_55	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0044104_55	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0044104_57	PHROG	phrog_398	NA	unknown function
UHGV-0044104_57	UniRef90	UniRef90_UPI0006909E95	putative HNHc nuclease	NA
UHGV-0044104_57	eggNOG-mapper	469604.HMPREF0946_01113	NA	NA
UHGV-0044104_57	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0044104_57	Structural annotation	PF16784	NA	NA
UHGV-0044104_62	PHROG	phrog_98	NA	unknown function
UHGV-0044104_62	UniRef90	UniRef90_A0A140PT62	YopX domain-containing protein	NA
UHGV-0044104_62	eggNOG-mapper	457405.FSDG_01550	YopX protein	NA
UHGV-0044104_62	Pfam	PF09643	YopX protein	YopX
UHGV-0044104_62	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0044104_62	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0044104_63	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0044104_63	UniRef90	UniRef90_A0A140PWJ5	Methyltransf_11 domain-containing protein	NA
UHGV-0044104_63	eggNOG-mapper	457405.FSDG_01549	methyltransferase	NA
UHGV-0044104_63	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0044104_63	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0044104_63	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0044104_63	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0044104_64	PHROG	phrog_419	NA	unknown function
UHGV-0044104_64	eggNOG-mapper	457405.FSDG_01548	NA	NA
UHGV-0044104_64	Structural annotation	PF14083	NA	NA
UHGV-0044104_65	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0044104_65	UniRef90	UniRef90_A0A133P079	dUTP diphosphatase	NA
UHGV-0044104_65	eggNOG-mapper	1384057.CD33_05110	dUTPase	NA
UHGV-0044104_65	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0044104_65	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0044104_65	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0044104_66	PHROG	phrog_989	NA	unknown function
UHGV-0044104_66	UniRef90	UniRef90_UPI000C1C18FF	helix-turn-helix domain-containing protein	NA
UHGV-0044104_67	KOfam	K14059	int; integrase	NA
UHGV-0044104_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0044104_67	UniRef90	UniRef90_A0A133P057	Site-specific recombinase, phage integrase family	NA
UHGV-0044104_67	eggNOG-mapper	457405.FSDG_01545	Belongs to the 'phage' integrase family	NA
UHGV-0044104_67	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0044104_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044104_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044104_67	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA