UHGV-0044123

Genome information

Genome length 31,613 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044123
vOTU ID	vOTU-044908
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_24558
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.92
Jumbo phage	No

Genome content
Genome length	31,613 bps
GC content	54.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.52%
Average CDS length	599.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044123_2	PHROG	phrog_35892	NA	unknown function
UHGV-0044123_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0044123_2	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0044123_4	PHROG	phrog_297	holin	lysis
UHGV-0044123_4	UniRef90	UniRef90_A0A498CN00	Phage holin	NA
UHGV-0044123_4	eggNOG-mapper	445972.ANACOL_00558	COG COG5546 Small integral membrane protein	NA
UHGV-0044123_4	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0044123_4	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0044123_4	COG	COG5546	NA	NA
UHGV-0044123_4	Structural annotation	COG5546	NA	NA
UHGV-0044123_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0044123_5	PHROG	phrog_435	endolysin	lysis
UHGV-0044123_5	UniRef90	UniRef90_A0A498CPS1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0044123_5	eggNOG-mapper	1161902.HMPREF0378_0155	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0044123_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0044123_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0044123_5	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0044123_7	PHROG	phrog_13890	NA	unknown function
UHGV-0044123_7	UniRef90	UniRef90_G9YS61	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0044123_7	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0044123_11	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0044123_11	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0044123_11	UniRef90	UniRef90_A0A498CJ04	XRE family transcriptional regulator	NA
UHGV-0044123_11	eggNOG-mapper	105420.BBPO01000049_gene1801	Helix-turn-helix domain	NA
UHGV-0044123_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044123_11	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0044123_12	UniRef90	UniRef90_A0A498CZE7	XRE family transcriptional regulator	NA
UHGV-0044123_12	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0044123_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044123_14	PHROG	phrog_862	NA	unknown function
UHGV-0044123_14	eggNOG-mapper	1235835.C814_00380	NA	NA
UHGV-0044123_14	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0044123_15	PHROG	phrog_398	NA	unknown function
UHGV-0044123_15	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0044123_15	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0044123_15	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0044123_15	Structural annotation	PF16784	NA	NA
UHGV-0044123_16	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044123_16	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-0044123_16	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0044123_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0044123_16	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0044123_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0044123_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0044123_17	UniRef90	UniRef90_A0A413FWW6	DNA helicase	NA
UHGV-0044123_17	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0044123_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0044123_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0044123_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0044123_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0044123_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0044123_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044123_19	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0044123_19	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-0044123_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0044123_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0044123_20	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0044123_20	UniRef90	UniRef90_A0A413FXN3	Methyltransferase	NA
UHGV-0044123_20	eggNOG-mapper	97139.C824_00741	DNA methylase	NA
UHGV-0044123_20	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0044123_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0044123_20	COG	COG0863	DNA modification methylase	NA
UHGV-0044123_20	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0044123_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0044123_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0044123_21	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0044123_21	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0044123_21	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0044123_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0044123_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0044123_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044123_21	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0044123_22	PHROG	phrog_7704	NA	unknown function
UHGV-0044123_22	UniRef90	UniRef90_UPI001873F304	NA	NA
UHGV-0044123_22	Pfam	PF04448	NA	DUF551
UHGV-0044123_22	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0044123_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0044123_26	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0044123_26	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0044123_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0044123_32	UniRef90	UniRef90_A0A498CPT9	RNA polymerase subunit sigma-70	NA
UHGV-0044123_32	eggNOG-mapper	1405.DJ92_861	NA	NA
UHGV-0044123_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0044123_32	COG	COG5484	NA	NA
UHGV-0044123_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0044123_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0044123_33	UniRef90	UniRef90_A0A498CRW6	Terminase large subunit	NA
UHGV-0044123_33	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0044123_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0044123_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0044123_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0044123_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0044123_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0044123_34	UniRef90	UniRef90_A0A498CMJ3	Phage portal protein	NA
UHGV-0044123_34	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0044123_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0044123_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0044123_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0044123_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0044123_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0044123_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0044123_35	UniRef90	UniRef90_A0A498CMD3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0044123_35	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0044123_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0044123_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0044123_35	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0044123_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0044123_36	UniRef90	UniRef90_A0A498CNG4	Phage major capsid protein	NA
UHGV-0044123_36	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0044123_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0044123_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0044123_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0044123_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0044123_37	PHROG	phrog_749	NA	unknown function
UHGV-0044123_37	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0044123_38	PHROG	phrog_19734	NA	unknown function
UHGV-0044123_38	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0044123_38	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0044123_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0044123_39	PHROG	phrog_78	tail terminator	connector
UHGV-0044123_39	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0044123_39	Structural annotation	PF05657	NA	NA
UHGV-0044123_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0044123_40	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0044123_40	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0044123_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0044123_40	Structural annotation	TIGR01725	NA	NA
UHGV-0044123_41	PHROG	phrog_88	major tail protein	tail
UHGV-0044123_41	UniRef90	UniRef90_A0A7U9IBX1	Phage major tail protein, phi13 family	NA
UHGV-0044123_41	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0044123_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0044123_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0044123_42	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0044123_42	Structural annotation	PF11836	NA	NA
UHGV-0044123_44	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0044123_44	PHROG	phrog_23464	NA	unknown function
UHGV-0044123_44	eggNOG-mapper	349161.Dred_2598	Phage tail tape measure protein, TP901 family	NA
UHGV-0044123_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0044123_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0044123_45	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0044123_45	NCBIFam	NF033679.1	DNRLRE domain-containing protein	NA
UHGV-0044123_45	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0044123_46	PHROG	phrog_26795	NA	unknown function
UHGV-0044123_46	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0044123_46	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0044123_46	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0044123_47	PHROG	phrog_26792	NA	unknown function
UHGV-0044123_48	eggNOG-mapper	1235835.C814_02995	NA	NA
UHGV-0044123_49	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA