UHGV-0044159

Genome information

Genome length 32,218 bps

CDS count 52

Completeness 86.59% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044159
vOTU ID	vOTU-018304
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_9770
BioSample	SAMEA2042571
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.85
Jumbo phage	No

Genome content
Genome length	32,218 bps
GC content	51.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.27%
Average CDS length	596.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044159_1	PHROG	phrog_263	holin	lysis
UHGV-0044159_1	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0044159_1	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0044159_1	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0044159_1	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0044159_1	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0044159_2	PHROG	phrog_9428	NA	unknown function
UHGV-0044159_2	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0044159_2	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0044159_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0044159_3	PHROG	phrog_435	endolysin	lysis
UHGV-0044159_3	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0044159_3	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0044159_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0044159_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0044159_3	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0044159_4	PHROG	phrog_27545	NA	unknown function
UHGV-0044159_4	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0044159_4	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0044159_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0044159_6	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0044159_6	Structural annotation	PF13306	NA	NA
UHGV-0044159_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0044159_9	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0044159_9	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0044159_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0044159_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0044159_9	COG	COG4926	Phage-related protein	NA
UHGV-0044159_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0044159_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0044159_10	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0044159_10	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0044159_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0044159_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0044159_11	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0044159_11	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0044159_11	eggNOG-mapper	994573.T472_0201810	tape measure	NA
UHGV-0044159_11	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0044159_11	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0044159_12	Structural annotation	PF11836	NA	NA
UHGV-0044159_13	PHROG	phrog_88	major tail protein	tail
UHGV-0044159_13	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0044159_13	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0044159_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0044159_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0044159_14	PHROG	phrog_78	tail terminator	connector
UHGV-0044159_14	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0044159_14	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0044159_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0044159_15	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0044159_15	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0044159_15	Structural annotation	TIGR01725	NA	NA
UHGV-0044159_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0044159_16	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0044159_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0044159_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0044159_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0044159_17	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0044159_17	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0044159_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0044159_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0044159_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0044159_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0044159_18	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0044159_18	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0044159_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0044159_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0044159_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0044159_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0044159_19	PHROG	phrog_16951	NA	unknown function
UHGV-0044159_19	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0044159_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0044159_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0044159_20	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0044159_20	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0044159_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0044159_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0044159_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0044159_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0044159_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0044159_21	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0044159_21	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0044159_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0044159_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0044159_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0044159_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0044159_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0044159_22	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0044159_22	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-0044159_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0044159_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0044159_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0044159_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0044159_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0044159_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044159_23	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0044159_23	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0044159_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0044159_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0044159_23	Structural annotation	PF05766	NA	NA
UHGV-0044159_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0044159_25	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0044159_25	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0044159_26	Pfam	PF11781	Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7	zf-RRN7
UHGV-0044159_27	Pfam	PF15499	Ubiquitin-specific peptidase-like, SUMO isopeptidase	Peptidase_C98
UHGV-0044159_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044159_28	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0044159_28	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0044159_29	PHROG	phrog_24518	NA	unknown function
UHGV-0044159_29	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0044159_30	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0044159_35	PHROG	phrog_15609	NA	unknown function
UHGV-0044159_35	UniRef90	UniRef90_A0A3A6ESC2	NA	NA
UHGV-0044159_35	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0044159_35	Pfam	PF11300	NA	DUF3102
UHGV-0044159_35	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0044159_36	PHROG	phrog_8470	NA	unknown function
UHGV-0044159_36	UniRef90	UniRef90_UPI001409E5A2	PcfJ domain-containing protein	NA
UHGV-0044159_36	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0044159_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0044159_36	Structural annotation	PF14284	NA	NA
UHGV-0044159_37	PHROG	phrog_7445	NA	unknown function
UHGV-0044159_37	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0044159_37	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0044159_37	Structural annotation	PF14058	NA	NA
UHGV-0044159_38	PHROG	phrog_824	NA	unknown function
UHGV-0044159_38	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0044159_38	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0044159_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0044159_38	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0044159_42	PHROG	phrog_22040	NA	unknown function
UHGV-0044159_42	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0044159_43	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0044159_43	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0044159_43	Pfam	PF04448	NA	DUF551
UHGV-0044159_45	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0044159_45	PHROG	phrog_18750	NA	unknown function
UHGV-0044159_45	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0044159_45	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0044159_45	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0044159_45	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0044159_45	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0044159_47	PHROG	phrog_6058	NA	unknown function
UHGV-0044159_47	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0044159_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0044159_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044159_48	UniRef90	UniRef90_A0A3D5TL86	Transcriptional regulator	NA
UHGV-0044159_48	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0044159_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044159_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044159_48	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0044159_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0044159_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044159_49	UniRef90	UniRef90_A0A3D5TL51	XRE family transcriptional regulator	NA
UHGV-0044159_49	eggNOG-mapper	445972.ANACOL_01759	sequence-specific DNA binding	NA
UHGV-0044159_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044159_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044159_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0044159_50	PHROG	phrog_87	metallo-protease	other
UHGV-0044159_50	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-0044159_50	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0044159_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0044159_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0044159_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0044159_51	Structural annotation	PF08797, TIGR00086	NA	NA
UHGV-0044159_52	KOfam	K14059	int; integrase	NA
UHGV-0044159_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0044159_52	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0044159_52	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0044159_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044159_52	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0044159_52	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA