UHGV-0044273

Genome information

Genome length 63,516 bps

CDS count 94

Completeness 95.31% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044273
vOTU ID	vOTU-013019
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_1320
BioSample	SAMD00036441
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.08
Jumbo phage	No

Genome content
Genome length	63,516 bps
GC content	55.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	88.60%
Average CDS length	601.66 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044273_1	KOfam	K14059	int; integrase	NA
UHGV-0044273_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0044273_1	UniRef90	UniRef90_A0A0A7I2Q0	Tyr recombinase domain-containing protein	NA
UHGV-0044273_1	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0044273_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0044273_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044273_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044273_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0044273_2	PHROG	phrog_881	holin	lysis
UHGV-0044273_2	UniRef90	UniRef90_A0A413KBR1	Holin	NA
UHGV-0044273_2	eggNOG-mapper	326426.Bbr_0318	Putative phage holin Dp-1	NA
UHGV-0044273_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0044273_2	Structural annotation	PF16938	NA	NA
UHGV-0044273_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0044273_3	PHROG	phrog_291	endolysin	lysis
UHGV-0044273_3	UniRef90	UniRef90_A0A1X2Z0Z4	Glycosyl hydrolase family 25	NA
UHGV-0044273_3	eggNOG-mapper	401473.BDP_1477	Glycosyl hydrolases family 25	NA
UHGV-0044273_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0044273_3	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0044273_3	Pfam	PF01476	LysM domain	LysM
UHGV-0044273_3	COG	COG1388	LysM repeat	NA
UHGV-0044273_3	Structural annotation	PF01183, TIGR02899, TIGR00683, COG3757	NA	NA
UHGV-0044273_5	Structural annotation	PF19487, NF040827	NA	NA
UHGV-0044273_6	Structural annotation	PF01105, NF033675	NA	NA
UHGV-0044273_7	Structural annotation	PF04862	NA	NA
UHGV-0044273_9	eggNOG-mapper	78346.BRUM_0384	NA	NA
UHGV-0044273_10	PHROG	phrog_1885	minor tail protein	tail
UHGV-0044273_10	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-0044273_10	COG	COG4372	NA	NA
UHGV-0044273_11	PHROG	phrog_1885	minor tail protein	tail
UHGV-0044273_11	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0044273_11	eggNOG-mapper	35760.BCHO_0828	NA	NA
UHGV-0044273_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0044273_12	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0044273_12	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0044273_12	eggNOG-mapper	1692.BMAGN_1457	NA	NA
UHGV-0044273_12	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0044273_13	PHROG	phrog_5577	minor tail protein	tail
UHGV-0044273_13	UniRef90	UniRef90_A0A087B697	Putative phage protein gp15	NA
UHGV-0044273_13	eggNOG-mapper	35760.BCHO_0830	NA	NA
UHGV-0044273_13	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0044273_14	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0044273_14	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-0044273_14	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0044273_14	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0044273_16	PHROG	phrog_36579	NA	unknown function
UHGV-0044273_17	PHROG	phrog_117	major tail protein	tail
UHGV-0044273_17	UniRef90	UniRef90_A0A087AF65	Gp22	NA
UHGV-0044273_17	eggNOG-mapper	35760.BCHO_0834	NA	NA
UHGV-0044273_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0044273_18	eggNOG-mapper	35760.BCHO_0835	NA	NA
UHGV-0044273_18	Structural annotation	PF12691	NA	NA
UHGV-0044273_19	PHROG	phrog_32608	NA	unknown function
UHGV-0044273_19	Structural annotation	PF17395	NA	NA
UHGV-0044273_20	PHROG	phrog_25853	NA	unknown function
UHGV-0044273_20	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0044273_20	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-0044273_20	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0044273_21	PHROG	phrog_36776	NA	unknown function
UHGV-0044273_21	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0044273_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0044273_22	UniRef90	UniRef90_UPI0018C2985B	major capsid protein	NA
UHGV-0044273_22	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0044273_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0044273_22	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0044273_23	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0044273_23	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0044273_23	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0044273_23	Structural annotation	PF02924	NA	NA
UHGV-0044273_24	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-0044273_24	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0044273_25	PHROG	phrog_36668	NA	unknown function
UHGV-0044273_25	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0044273_25	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0044273_25	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0044273_26	PHROG	phrog_104	portal protein	head and packaging
UHGV-0044273_26	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-0044273_26	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0044273_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044273_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0044273_27	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0044273_27	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0044273_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0044273_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0044273_28	PHROG	phrog_226	minor tail protein	tail
UHGV-0044273_29	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044273_29	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-0044273_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0044273_29	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0044273_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0044273_30	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044273_30	UniRef90	UniRef90_A0A0A7I6T1	HNHc domain-containing protein	NA
UHGV-0044273_30	eggNOG-mapper	1386089.N865_02065	HNH nucleases	NA
UHGV-0044273_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0044273_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0044273_40	eggNOG-mapper	445975.COLSTE_02319	NA	NA
UHGV-0044273_43	UniRef90	UniRef90_A0A1X2Z130	XRE family transcriptional regulator	NA
UHGV-0044273_43	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0044273_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0044273_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044273_44	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0044273_44	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0044273_44	UniRef90	UniRef90_A0A1X3A1X4	PbsX family transcriptional regulator	NA
UHGV-0044273_44	eggNOG-mapper	1435051.BMOU_1231	Helix-turn-helix XRE-family like proteins	NA
UHGV-0044273_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044273_44	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0044273_45	PHROG	phrog_14333	NA	unknown function
UHGV-0044273_45	UniRef90	UniRef90_A0A6I1GPA6	Transcriptional regulator	NA
UHGV-0044273_45	eggNOG-mapper	547043.BIFPSEUDO_03942	NA	NA
UHGV-0044273_45	Pfam	PF13711	NA	DUF4160
UHGV-0044273_45	Structural annotation	PF13711	NA	NA
UHGV-0044273_46	PHROG	phrog_37898	NA	unknown function
UHGV-0044273_46	UniRef90	UniRef90_A0A2U2MTW0	NA	NA
UHGV-0044273_46	eggNOG-mapper	702459.BBPR_0014	NA	NA
UHGV-0044273_46	Pfam	PF10387	NA	DUF2442
UHGV-0044273_50	PHROG	phrog_547	phosphoesterase	other
UHGV-0044273_50	UniRef90	UniRef90_A0A1X3A1P1	Metallophos domain-containing protein	NA
UHGV-0044273_50	eggNOG-mapper	1680.BADO_0635	phosphoesterase or phosphohydrolase	NA
UHGV-0044273_50	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0044273_50	COG	COG4186	NA	NA
UHGV-0044273_50	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-0044273_51	Structural annotation	PF10115, COG5453	NA	NA
UHGV-0044273_53	PHROG	phrog_908	NA	unknown function
UHGV-0044273_53	eggNOG-mapper	1692.BMAGN_1534	NA	NA
UHGV-0044273_54	Structural annotation	PF13384	NA	NA
UHGV-0044273_56	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0044273_56	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0044273_56	Structural annotation	PF01815	NA	NA
UHGV-0044273_58	Structural annotation	TIGR03655	NA	NA
UHGV-0044273_63	Structural annotation	TIGR03655	NA	NA
UHGV-0044273_65	PHROG	phrog_17662	NA	unknown function
UHGV-0044273_65	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0044273_65	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0044273_65	Structural annotation	MF_01225_B, TIGR04334, COG0535	NA	NA
UHGV-0044273_68	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-0044273_69	PHROG	phrog_236	nucleotide kinase	other
UHGV-0044273_69	UniRef90	UniRef90_A0A1X2Z7L9	NA	NA
UHGV-0044273_69	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-0044273_69	Pfam	PF11753	NA	DUF3310
UHGV-0044273_72	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0044273_72	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0044273_72	UniRef90	UniRef90_R6P7Q1	dUTPase domain-containing protein	NA
UHGV-0044273_72	eggNOG-mapper	1151126.AQYI01000003_gene554	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0044273_72	Pfam	PF00692	dUTPase	dUTPase
UHGV-0044273_72	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0044273_72	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0044273_72	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0044273_73	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0044273_73	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-0044273_73	eggNOG-mapper	1688.BCUN_0417	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0044273_73	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0044273_73	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-0044273_74	eggNOG-mapper	1394176.AWUO01000014_gene674	NA	NA
UHGV-0044273_75	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044273_75	eggNOG-mapper	941770.GL622178_gene367	Replication initiation and membrane attachment	NA
UHGV-0044273_75	COG	COG3756	NA	NA
UHGV-0044273_75	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0044273_77	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044273_77	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0044273_77	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0044273_77	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0044273_78	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0044273_78	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044273_78	UniRef90	UniRef90_A0A1X2ZJI9	Single-stranded DNA-binding protein	NA
UHGV-0044273_78	eggNOG-mapper	1077144.AGFF01000002_gene2265	single-stranded DNA-binding protein	NA
UHGV-0044273_78	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0044273_78	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0044273_78	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0044273_81	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0044273_81	UniRef90	UniRef90_A0A0A7I2H6	Phage recombination protein Bet	NA
UHGV-0044273_81	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0044273_81	Pfam	PF03837	RecT family	RecT
UHGV-0044273_81	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0044273_81	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0044273_81	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0044273_82	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0044273_83	KOfam	K04074	divIVA; cell division initiation protein	NA
UHGV-0044273_83	UniRef90	UniRef90_A0A564VUN2	Cell wall synthesis protein Wag31	NA
UHGV-0044273_83	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-0044273_83	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0044273_83	COG	COG3599	Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD	NA
UHGV-0044273_83	Structural annotation	PF05103, MF_02011, NF010725	NA	NA
UHGV-0044273_88	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0044273_88	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0044273_88	UniRef90	UniRef90_A0A1X3A2C2	Phage antirepressor protein	NA
UHGV-0044273_88	eggNOG-mapper	35760.BCHO_0886	BRO family, N-terminal domain	NA
UHGV-0044273_88	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044273_88	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0044273_88	COG	COG3617	Prophage antirepressor	NA
UHGV-0044273_88	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0044273_89	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0044273_89	PHROG	phrog_9562	NA	unknown function
UHGV-0044273_89	UniRef90	UniRef90_A7A2N4	Pentapeptide repeat protein	NA
UHGV-0044273_89	eggNOG-mapper	1235799.C818_02571	Pentapeptide repeats (9 copies)	NA
UHGV-0044273_89	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0044273_89	Pfam	PF19062	NA	DUF5758
UHGV-0044273_89	COG	COG1357	NA	NA
UHGV-0044273_89	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0044273_90	PHROG	phrog_9103	transcriptional repressor	transcription regulation
UHGV-0044273_90	UniRef90	UniRef90_A0A0A7I2H4	XRE family transcriptional regulator	NA
UHGV-0044273_90	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-0044273_90	Structural annotation	PF20432, NF000090, COG1476	NA	NA
UHGV-0044273_91	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044273_91	UniRef90	UniRef90_A0A1X2ZGN8	DNA-binding protein	NA
UHGV-0044273_91	eggNOG-mapper	1437605.BACT_1107	NA	NA
UHGV-0044273_91	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-0044273_92	PHROG	phrog_87	metallo-protease	other
UHGV-0044273_92	UniRef90	UniRef90_A0A1X2ZJP7	Peptidase_M78 domain-containing protein	NA
UHGV-0044273_92	eggNOG-mapper	78346.BRUM_0422	NA	NA
UHGV-0044273_92	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0044273_92	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0044273_94	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0044273_94	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0044273_94	UniRef90	UniRef90_A0A564VW46	Thymidylate synthase	NA
UHGV-0044273_94	eggNOG-mapper	35760.BCHO_0602	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0044273_94	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0044273_94	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-0044273_94	COG	COG0207	Thymidylate synthase	NA
UHGV-0044273_94	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-0044273_94	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA