UHGV-0044293

Genome information

Genome length 43,634 bps

CDS count 85

Completeness 75.70% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044293
vOTU ID	vOTU-037384
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_4240
BioSample	SAMEA728586
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.77
Jumbo phage	No

Genome content
Genome length	43,634 bps
GC content	47.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	81.18%
Average CDS length	419.01 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044293_1	PHROG	phrog_158	major tail protein	tail
UHGV-0044293_1	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0044293_1	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0044293_1	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0044293_2	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0044293_3	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0044293_4	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0044293_4	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0044293_5	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0044293_5	Structural annotation	TIGR01560	NA	NA
UHGV-0044293_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-0044293_6	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0044293_6	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0044293_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0044293_6	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0044293_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0044293_9	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0044293_9	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0044293_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0044293_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044293_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0044293_12	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0044293_12	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0044293_12	COG	COG5410	NA	NA
UHGV-0044293_12	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0044293_16	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0044293_16	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0044293_16	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0044293_16	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0044293_16	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0044293_16	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0044293_16	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0044293_18	Structural annotation	NF009949	NA	NA
UHGV-0044293_19	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0044293_19	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0044293_19	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0044293_19	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0044293_19	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0044293_19	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0044293_19	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0044293_20	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0044293_20	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0044293_22	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0044293_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0044293_23	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0044293_23	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0044293_23	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0044293_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044293_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0044293_23	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0044293_24	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0044293_24	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0044293_24	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0044293_28	PHROG	phrog_15551	NA	unknown function
UHGV-0044293_28	UniRef90	UniRef90_E1A234	LPD11 domain-containing protein	NA
UHGV-0044293_28	eggNOG-mapper	1226322.HMPREF1545_03227	SNF2 family N-terminal domain	NA
UHGV-0044293_28	Pfam	PF18824	Large polyvalent protein-associated domain 11	LPD11
UHGV-0044293_28	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0044293_28	Structural annotation	PF18824	NA	NA
UHGV-0044293_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044293_29	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0044293_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0044293_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0044293_32	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0044293_32	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0044293_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0044293_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0044293_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0044293_33	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0044293_33	Pfam	PF19808	NA	DUF6291
UHGV-0044293_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0044293_33	Structural annotation	PF19808	NA	NA
UHGV-0044293_36	Structural annotation	NF041588	NA	NA
UHGV-0044293_47	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0044293_47	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0044293_47	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0044293_47	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0044293_50	Structural annotation	PF16677	NA	NA
UHGV-0044293_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0044293_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0044293_53	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0044293_53	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0044293_53	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0044293_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0044293_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0044293_53	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0044293_56	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044293_56	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0044293_56	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0044293_56	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0044293_57	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0044293_57	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0044293_57	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0044293_57	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044293_57	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0044293_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0044293_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044293_58	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0044293_58	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0044293_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0044293_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0044293_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0044293_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0044293_58	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0044293_59	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0044293_59	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0044293_59	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0044293_59	Pfam	PF04404	ERF superfamily	ERF
UHGV-0044293_59	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0044293_60	PHROG	phrog_38771	NA	unknown function
UHGV-0044293_61	eggNOG-mapper	272623.L157023	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0044293_61	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0044293_61	Structural annotation	PF04606, NF007241, COG3478	NA	NA
UHGV-0044293_62	Structural annotation	PF14143	NA	NA
UHGV-0044293_63	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0044293_63	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0044293_66	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0044293_66	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0044293_68	Structural annotation	TIGR03826	NA	NA
UHGV-0044293_69	Structural annotation	PF10922	NA	NA
UHGV-0044293_70	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0044293_70	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0044293_70	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0044293_70	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0044293_70	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0044293_70	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0044293_70	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0044293_70	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0044293_70	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0044293_71	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044293_71	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0044293_71	eggNOG-mapper	411460.RUMTOR_00063	helix-turn-helix	NA
UHGV-0044293_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044293_71	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044293_71	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0044293_72	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044293_72	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0044293_77	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0044293_77	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044293_77	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044293_77	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0044293_78	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044293_78	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0044293_78	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0044293_78	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0044293_78	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0044293_78	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0044293_78	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0044293_79	PHROG	phrog_7704	NA	unknown function
UHGV-0044293_79	UniRef90	UniRef90_X0VL21	NA	NA
UHGV-0044293_79	Pfam	PF04448	NA	DUF551
UHGV-0044293_80	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0044293_80	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0044293_80	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0044293_80	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0044293_80	Pfam	PF13614	AAA domain	AAA_31
UHGV-0044293_80	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0044293_80	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0044293_81	Pfam	PF04448	NA	DUF551
UHGV-0044293_82	Structural annotation	PF07878	NA	NA
UHGV-0044293_83	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0044293_83	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0044293_83	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0044293_84	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0044293_85	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA