UHGV-0044316

Genome information

Genome length 37,578 bps

CDS count 55

Completeness 94.09% (high-quality)

geNomad score 0.9651

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044316
vOTU ID	vOTU-076476
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_12910
BioSample	SAMEA2042838
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9651
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.91
Jumbo phage	No

Genome content
Genome length	37,578 bps
GC content	46.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.49%
Average CDS length	628.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044316_1	UniRef90	UniRef90_UPI001D0106BA	virulence RhuM family protein	NA
UHGV-0044316_1	eggNOG-mapper	706434.HMPREF9429_00185	Virulence protein RhuM family	NA
UHGV-0044316_1	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0044316_1	COG	COG3943	NA	NA
UHGV-0044316_1	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0044316_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0044316_2	PHROG	phrog_8036	NA	unknown function
UHGV-0044316_2	UniRef90	UniRef90_A0A1I5TIN6	DNA-damage-inducible protein D	NA
UHGV-0044316_2	eggNOG-mapper	658655.HMPREF0988_02004	NA	NA
UHGV-0044316_2	AcrCatalog	cluster_17589	NA	NA
UHGV-0044316_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0044316_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044316_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0044316_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0044316_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0044316_3	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0044316_3	Structural annotation	PF21277	NA	NA
UHGV-0044316_4	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0044316_4	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0044316_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0044316_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0044316_5	PHROG	phrog_2837	tail protein	tail
UHGV-0044316_5	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0044316_5	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0044316_5	Pfam	PF14301	NA	DUF4376
UHGV-0044316_5	Structural annotation	PF14301	NA	NA
UHGV-0044316_6	Structural annotation	PF16116	NA	NA
UHGV-0044316_7	PHROG	phrog_33356	NA	unknown function
UHGV-0044316_7	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0044316_8	PHROG	phrog_4062	NA	unknown function
UHGV-0044316_9	PHROG	phrog_2427	NA	unknown function
UHGV-0044316_10	PHROG	phrog_1101	tail protein	tail
UHGV-0044316_10	UniRef90	UniRef90_R6AN79	Conserved domain protein	NA
UHGV-0044316_10	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0044316_10	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0044316_10	COG	COG1511	NA	NA
UHGV-0044316_10	Structural annotation	PF13550, PF16323, NF040662, NF010681, COG4733	NA	NA
UHGV-0044316_11	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0044316_11	PHROG	phrog_329	minor tail protein	tail
UHGV-0044316_11	UniRef90	UniRef90_R6BA09	Cell wall-associated hydrolase	NA
UHGV-0044316_11	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0044316_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0044316_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0044316_11	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0044316_12	PHROG	phrog_778	tail assembly protein	tail
UHGV-0044316_12	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0044316_12	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0044316_12	Pfam	PF09931	NA	DUF2163
UHGV-0044316_12	COG	COG5449	NA	NA
UHGV-0044316_12	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0044316_13	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0044316_13	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0044316_13	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0044316_13	Pfam	PF09343	NA	DUF2460
UHGV-0044316_13	COG	COG5448	NA	NA
UHGV-0044316_13	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0044316_14	PHROG	phrog_12798	NA	unknown function
UHGV-0044316_14	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0044316_14	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0044316_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0044316_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0044316_14	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0044316_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0044316_16	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0044316_16	Structural annotation	PF19591	NA	NA
UHGV-0044316_17	PHROG	phrog_1407	major tail protein	tail
UHGV-0044316_17	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0044316_17	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0044316_17	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0044316_17	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0044316_17	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0044316_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0044316_18	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0044316_18	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0044316_18	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0044316_19	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0044316_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0044316_20	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0044316_20	eggNOG-mapper	1000569.HMPREF1040_0194	Phage virion morphogenesis	NA
UHGV-0044316_20	COG	COG5005	NA	NA
UHGV-0044316_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0044316_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0044316_21	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0044316_21	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0044316_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0044316_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0044316_22	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0044316_22	Structural annotation	PF06810	NA	NA
UHGV-0044316_25	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0044316_25	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0044316_25	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0044316_26	PHROG	phrog_145	portal protein	head and packaging
UHGV-0044316_26	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0044316_26	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0044316_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044316_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0044316_27	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0044316_27	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0044316_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0044316_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0044316_27	COG	COG5410	NA	NA
UHGV-0044316_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0044316_29	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0044316_29	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0044316_29	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0044316_29	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0044316_30	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0044316_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0044316_31	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0044316_31	eggNOG-mapper	1235799.C818_01032	NA	NA
UHGV-0044316_31	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0044316_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0044316_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0044316_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044316_34	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0044316_34	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0044316_34	Pfam	PF06356	NA	DUF1064
UHGV-0044316_34	Structural annotation	PF06356	NA	NA
UHGV-0044316_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0044316_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044316_36	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0044316_36	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0044316_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0044316_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0044316_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0044316_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0044316_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0044316_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-0044316_38	UniRef90	UniRef90_U7UMX2	PF11753 family protein	NA
UHGV-0044316_38	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0044316_38	Pfam	PF11753	NA	DUF3310
UHGV-0044316_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044316_40	UniRef90	UniRef90_A0A2W4GH61	HNH endonuclease	NA
UHGV-0044316_40	eggNOG-mapper	60520.HR47_11980	NA	NA
UHGV-0044316_41	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0044316_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0044316_41	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0044316_41	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0044316_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0044316_41	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0044316_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0044316_41	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0044316_42	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0044316_42	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0044316_42	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0044316_42	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0044316_42	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0044316_42	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0044316_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0044316_43	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0044316_43	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0044316_44	PHROG	phrog_7566	NA	unknown function
UHGV-0044316_44	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0044316_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0044316_45	UniRef90	UniRef90_UPI0015943421	ERF family protein	NA
UHGV-0044316_45	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0044316_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0044316_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0044316_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0044316_46	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0044316_46	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0044316_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0044316_46	Structural annotation	PF05565	NA	NA
UHGV-0044316_48	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0044316_48	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0044316_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0044316_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044316_50	UniRef90	UniRef90_A0A0M2NHZ6	NA	NA
UHGV-0044316_50	eggNOG-mapper	1540092.A0A0A0RSY9_9CAUD	transferase activity, transferring alkyl or aryl (other than methyl) groups	NA
UHGV-0044316_50	Structural annotation	PF17375	NA	NA
UHGV-0044316_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0044316_51	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0044316_51	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-0044316_51	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0044316_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044316_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0044316_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0044316_51	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0044316_52	UniRef90	UniRef90_R6XZB2	HTH cro/C1-type domain-containing protein	NA
UHGV-0044316_52	eggNOG-mapper	632245.CLP_2950	Helix-turn-helix XRE-family like proteins	NA
UHGV-0044316_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044316_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044316_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0044316_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0044316_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044316_53	UniRef90	UniRef90_R6WK78	HTH cro/C1-type domain-containing protein	NA
UHGV-0044316_53	eggNOG-mapper	768710.DesyoDRAFT_5259	PFAM helix-turn-helix	NA
UHGV-0044316_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0044316_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044316_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044316_53	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0044316_54	PHROG	phrog_87	metallo-protease	other
UHGV-0044316_54	UniRef90	UniRef90_R6WQB8	Peptidase_M78 domain-containing protein	NA
UHGV-0044316_54	eggNOG-mapper	484770.UFO1_1662	NA	NA
UHGV-0044316_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0044316_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0044316_54	Structural annotation	PF06114, COG2856	NA	NA