UHGV-0044374

Genome information

Genome length 40,583 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044374
vOTU ID	vOTU-061299
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3521
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.46
Jumbo phage	No

Genome content
Genome length	40,583 bps
GC content	46.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.51%
Average CDS length	651.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044374_1	UniRef90	UniRef90_A0A174B1C2	Peptidase	NA
UHGV-0044374_1	eggNOG-mapper	748224.HMPREF9436_01657	peptidase dimerisation domain	NA
UHGV-0044374_1	COG	COG0624	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	NA
UHGV-0044374_2	KOfam	K14059	int; integrase	NA
UHGV-0044374_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0044374_2	UniRef90	UniRef90_A0A174AZK7	Site-specific tyrosine recombinase XerC	NA
UHGV-0044374_2	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0044374_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0044374_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0044374_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044374_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044374_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0044374_3	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0044374_3	Structural annotation	PF02701	NA	NA
UHGV-0044374_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0044374_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044374_6	UniRef90	UniRef90_A0A174AZ53	Helix-turn-helix domain	NA
UHGV-0044374_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0044374_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0044374_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044374_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0044374_10	PHROG	phrog_6058	NA	unknown function
UHGV-0044374_10	UniRef90	UniRef90_A0A174B0Z1	Helix-turn-helix domain	NA
UHGV-0044374_10	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0044374_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044374_10	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0044374_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0044374_14	PHROG	phrog_1499	NA	unknown function
UHGV-0044374_14	UniRef90	UniRef90_A0A174B373	ATPase involved in DNA repair	NA
UHGV-0044374_14	eggNOG-mapper	742723.HMPREF9477_00929	AAA domain	NA
UHGV-0044374_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-0044374_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0044374_14	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0044374_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0044374_15	UniRef90	UniRef90_UPI001897B051	AAA family ATPase	NA
UHGV-0044374_15	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-0044374_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0044374_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0044374_16	PHROG	phrog_2698	NA	unknown function
UHGV-0044374_16	UniRef90	UniRef90_UPI00189B1EC1	NA	NA
UHGV-0044374_16	eggNOG-mapper	478749.BRYFOR_07585	NA	NA
UHGV-0044374_16	Structural annotation	PF05037	NA	NA
UHGV-0044374_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0044374_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0044374_17	UniRef90	UniRef90_A0A174B1D7	Type-1 restriction enzyme R protein	NA
UHGV-0044374_17	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0044374_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0044374_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0044374_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0044374_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0044374_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0044374_18	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0044374_18	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0044374_18	UniRef90	UniRef90_A0A174B086	Primase C terminal 2 (PriCT-2)	NA
UHGV-0044374_18	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0044374_18	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0044374_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-0044374_18	COG	COG3598	RecA-family ATPase	NA
UHGV-0044374_18	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0044374_19	PHROG	phrog_16687	NA	unknown function
UHGV-0044374_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0044374_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044374_20	UniRef90	UniRef90_A0A174B0Z4	Holliday junction resolvase	NA
UHGV-0044374_20	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0044374_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0044374_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0044374_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0044374_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0044374_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0044374_25	UniRef90	UniRef90_A0A174B4R3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0044374_25	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0044374_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0044374_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0044374_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044374_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0044374_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0044374_26	UniRef90	UniRef90_A0A174B4K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0044374_26	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0044374_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0044374_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0044374_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0044374_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0044374_28	UniRef90	UniRef90_UPI001C0F3787	helix-turn-helix domain-containing protein	NA
UHGV-0044374_28	eggNOG-mapper	1522092.A0A090DCM3_9CAUD	endonuclease activity	NA
UHGV-0044374_28	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0044374_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0044374_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0044374_29	UniRef90	UniRef90_A0A174B1X3	Phage terminase, large subunit, PBSX family	NA
UHGV-0044374_29	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0044374_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0044374_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0044374_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0044374_30	UniRef90	UniRef90_A0A174B3T3	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0044374_30	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-0044374_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0044374_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0044374_31	PHROG	phrog_25639	NA	unknown function
UHGV-0044374_31	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0044374_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0044374_32	UniRef90	UniRef90_A0A174B2Q8	Phage minor capsid protein 2	NA
UHGV-0044374_32	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0044374_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0044374_32	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0044374_32	Structural annotation	PF06152	NA	NA
UHGV-0044374_34	PHROG	phrog_3675	NA	unknown function
UHGV-0044374_34	UniRef90	UniRef90_A0A174B2I0	YjcQ protein	NA
UHGV-0044374_34	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0044374_34	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0044374_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0044374_35	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-0044374_35	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0044374_35	Pfam	PF14359	NA	DUF4406
UHGV-0044374_35	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0044374_36	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0044374_36	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0044374_36	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0044374_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0044374_38	UniRef90	UniRef90_A0A174B6A1	Phage minor structural protein GP20	NA
UHGV-0044374_38	eggNOG-mapper	1294142.CINTURNW_1028	Phage minor structural protein GP20	NA
UHGV-0044374_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0044374_38	Structural annotation	PF06810	NA	NA
UHGV-0044374_39	PHROG	phrog_212	major head protein	head and packaging
UHGV-0044374_39	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-0044374_39	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0044374_39	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0044374_40	PHROG	phrog_15682	NA	unknown function
UHGV-0044374_40	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-0044374_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0044374_41	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0044374_42	PHROG	phrog_8710	NA	unknown function
UHGV-0044374_42	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0044374_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0044374_43	eggNOG-mapper	1282664.H354_06681	NA	NA
UHGV-0044374_44	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0044374_44	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0044374_44	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0044374_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0044374_44	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0044374_45	PHROG	phrog_820	major tail protein	tail
UHGV-0044374_45	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0044374_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0044374_46	PHROG	phrog_8300	NA	unknown function
UHGV-0044374_46	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0044374_46	Structural annotation	PF06854	NA	NA
UHGV-0044374_47	PHROG	phrog_8355	NA	unknown function
UHGV-0044374_47	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-0044374_47	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0044374_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0044374_48	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0044374_48	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0044374_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0044374_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0044374_49	PHROG	phrog_1194	NA	unknown function
UHGV-0044374_49	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0044374_49	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0044374_50	PHROG	phrog_6616	tail protein	tail
UHGV-0044374_50	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0044374_50	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0044374_50	COG	COG4926	Phage-related protein	NA
UHGV-0044374_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0044374_51	PHROG	phrog_11037	NA	unknown function
UHGV-0044374_51	UniRef90	UniRef90_A0A174B682	NlpC/P60 family	NA
UHGV-0044374_51	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0044374_51	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0044374_51	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0044374_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0044374_51	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0044374_52	PHROG	phrog_24267	NA	unknown function
UHGV-0044374_52	UniRef90	UniRef90_A0A174B5G0	Phage-related holin (Lysis protein)	NA
UHGV-0044374_52	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0044374_52	COG	COG4675	Phage tail collar domain	NA
UHGV-0044374_53	PHROG	phrog_19695	NA	unknown function
UHGV-0044374_53	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0044374_53	Structural annotation	PF19714	NA	NA
UHGV-0044374_54	PHROG	phrog_28673	tail protein	tail
UHGV-0044374_54	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0044374_56	PHROG	phrog_4105	NA	unknown function
UHGV-0044374_56	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0044374_57	PHROG	phrog_1129	holin	lysis
UHGV-0044374_57	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0044374_57	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0044374_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0044374_57	Structural annotation	PF16079	NA	NA
UHGV-0044374_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0044374_58	PHROG	phrog_3088	amidase	lysis
UHGV-0044374_58	UniRef90	UniRef90_A0A174B7N2	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0044374_58	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0044374_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0044374_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0044374_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0044374_58	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA