UHGV-0044544

Genome information

Genome length 36,986 bps

CDS count 48

Completeness 93.63% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044544
vOTU ID	vOTU-061666
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3890
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.46
Jumbo phage	No

Genome content
Genome length	36,986 bps
GC content	34.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	85.33%
Average CDS length	659.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044544_1	KOfam	K02246	comGD; competence protein ComGD	NA
UHGV-0044544_1	UniRef90	UniRef90_E0HH10	Prepilin-type cleavage/methylation N-terminal domain protein	NA
UHGV-0044544_1	eggNOG-mapper	1201292.DR75_947	COG2165 Type II secretory pathway, pseudopilin PulG	NA
UHGV-0044544_1	NCBIFam	NF040982.1	competence type IV pilus minor pilin ComGD	NA
UHGV-0044544_1	COG	COG4970	Type IV pilus assembly protein FimT	NA
UHGV-0044544_2	KOfam	K14059	int; integrase	NA
UHGV-0044544_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0044544_2	UniRef90	UniRef90_R3KYW4	Phage integrase	NA
UHGV-0044544_2	eggNOG-mapper	226185.EF_2043	Belongs to the 'phage' integrase family	NA
UHGV-0044544_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0044544_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044544_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044544_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0044544_3	PHROG	phrog_9078	NA	unknown function
UHGV-0044544_3	UniRef90	UniRef90_UPI000F7B0E5B	TRAM domain-containing protein	NA
UHGV-0044544_3	eggNOG-mapper	1201292.DR75_1546	NA	NA
UHGV-0044544_3	Structural annotation	PF11948, MF_01959, NF009637, COG2332	NA	NA
UHGV-0044544_4	PHROG	phrog_1904	endolysin; lysM motif	lysis
UHGV-0044544_4	UniRef90	UniRef90_A0A125W9C0	LysM domain protein	NA
UHGV-0044544_4	eggNOG-mapper	1201292.DR75_1486	LysM domain	NA
UHGV-0044544_4	Pfam	PF01476	LysM domain	LysM
UHGV-0044544_4	COG	COG1388	LysM repeat	NA
UHGV-0044544_5	PHROG	phrog_1516	NA	unknown function
UHGV-0044544_5	UniRef90	UniRef90_E6ICU4	Putative toxin-antitoxin system, toxin component	NA
UHGV-0044544_5	eggNOG-mapper	226185.EF_2041	IrrE N-terminal-like domain	NA
UHGV-0044544_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0044544_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0044544_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0044544_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0044544_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044544_6	UniRef90	UniRef90_E2YTC7	DNA-binding helix-turn-helix protein	NA
UHGV-0044544_6	eggNOG-mapper	226185.EF_2040	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0044544_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044544_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044544_6	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0044544_7	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044544_7	UniRef90	UniRef90_A0A7Z1Y8L0	XRE family transcriptional regulator	NA
UHGV-0044544_7	eggNOG-mapper	1158614.I592_02300	NA	NA
UHGV-0044544_7	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0044544_8	PHROG	phrog_14980	NA	unknown function
UHGV-0044544_8	eggNOG-mapper	574376.BAMA_02040	NA	NA
UHGV-0044544_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0044544_9	UniRef90	UniRef90_R3JGN7	Rha family phage regulatory protein	NA
UHGV-0044544_9	eggNOG-mapper	226185.EF_2037	ORF6C domain	NA
UHGV-0044544_9	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0044544_9	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0044544_9	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0044544_9	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0044544_9	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0044544_10	PHROG	phrog_1422	NA	unknown function
UHGV-0044544_10	UniRef90	UniRef90_A0A6G3GGX0	NA	NA
UHGV-0044544_10	eggNOG-mapper	226185.EF_2036	NA	NA
UHGV-0044544_10	Pfam	PF07411	NA	DUF1508
UHGV-0044544_10	COG	COG3422	NA	NA
UHGV-0044544_10	Structural annotation	PF07411, NF041908, COG3422	NA	NA
UHGV-0044544_11	PHROG	phrog_1270	NA	unknown function
UHGV-0044544_12	PHROG	phrog_4384	NA	unknown function
UHGV-0044544_13	PHROG	phrog_4690	NA	unknown function
UHGV-0044544_14	PHROG	phrog_3012	NA	unknown function
UHGV-0044544_14	eggNOG-mapper	1201292.DR75_1666	NA	NA
UHGV-0044544_14	Structural annotation	PF00410, MF_01302_B	NA	NA
UHGV-0044544_15	PHROG	phrog_15434	NA	unknown function
UHGV-0044544_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044544_16	UniRef90	UniRef90_D2IYT8	Endonuclease YqaJ superfamily	NA
UHGV-0044544_16	eggNOG-mapper	673832.D2IYT8_9CAUD	YqaJ-like viral recombinase domain	NA
UHGV-0044544_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0044544_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0044544_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0044544_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0044544_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0044544_17	UniRef90	UniRef90_D2IYT9	RecT family protein	NA
UHGV-0044544_17	eggNOG-mapper	673832.D2IYT9_9CAUD	DNA metabolic process	NA
UHGV-0044544_17	Pfam	PF03837	RecT family	RecT
UHGV-0044544_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0044544_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0044544_18	PHROG	phrog_25071	NA	unknown function
UHGV-0044544_18	UniRef90	UniRef90_S4BVD4	DnaD domain protein	NA
UHGV-0044544_18	eggNOG-mapper	673837.D2IZR2_9CAUD	NA	NA
UHGV-0044544_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0044544_18	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0044544_18	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0044544_18	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0044544_19	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044544_19	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0044544_19	eggNOG-mapper	1140001.I571_01721	NA	NA
UHGV-0044544_19	Structural annotation	PF17399	NA	NA
UHGV-0044544_20	PHROG	phrog_715	MazG-like pyrophosphatase	other
UHGV-0044544_20	UniRef90	UniRef90_R3H4X5	MazG domain-containing protein	NA
UHGV-0044544_20	eggNOG-mapper	673832.D2IYU1_9CAUD	sequence-specific DNA binding	NA
UHGV-0044544_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0044544_20	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0044544_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0044544_21	PHROG	phrog_24390	NA	unknown function
UHGV-0044544_21	UniRef90	UniRef90_A0A125W4C7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0044544_21	eggNOG-mapper	226185.EF_2128	Endodeoxyribonuclease RusA	NA
UHGV-0044544_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0044544_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0044544_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0044544_22	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0044544_22	UniRef90	UniRef90_D2IYV6	Transcriptional regulator ArpU family	NA
UHGV-0044544_22	eggNOG-mapper	1201292.DR75_1521	ArpU family	NA
UHGV-0044544_22	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0044544_22	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0044544_23	PHROG	phrog_1202	NA	unknown function
UHGV-0044544_23	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-0044544_23	Structural annotation	PF18789	NA	NA
UHGV-0044544_25	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0044544_25	UniRef90	UniRef90_UPI0001E19CD8	phage terminase small subunit	NA
UHGV-0044544_25	eggNOG-mapper	1158604.I591_00397	Phage terminase small subunit	NA
UHGV-0044544_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0044544_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0044544_25	COG	COG5484	NA	NA
UHGV-0044544_25	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0044544_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0044544_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0044544_26	UniRef90	UniRef90_E0HA02	Phage terminase, large subunit, PBSX family	NA
UHGV-0044544_26	eggNOG-mapper	1201292.DR75_1517	Terminase RNAseH like domain	NA
UHGV-0044544_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0044544_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0044544_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0044544_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0044544_26	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0044544_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0044544_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0044544_27	UniRef90	UniRef90_R3KC41	SPP1 family phage portal protein	NA
UHGV-0044544_27	eggNOG-mapper	1201292.DR75_1516	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0044544_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0044544_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0044544_28	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0044544_28	UniRef90	UniRef90_R3KRT0	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0044544_28	eggNOG-mapper	226185.EF_2015	cell adhesion	NA
UHGV-0044544_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0044544_28	COG	COG2369	NA	NA
UHGV-0044544_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0044544_29	PHROG	phrog_5859	NA	unknown function
UHGV-0044544_29	eggNOG-mapper	1201292.DR75_1513	NA	NA
UHGV-0044544_29	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0044544_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0044544_30	UniRef90	UniRef90_UPI0009C6DB43	NA	NA
UHGV-0044544_30	eggNOG-mapper	1201292.DR75_1512	NA	NA
UHGV-0044544_30	Pfam	PF14265	NA	DUF4355
UHGV-0044544_30	Structural annotation	PF14265	NA	NA
UHGV-0044544_31	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0044544_31	UniRef90	UniRef90_UPI00094A476A	NA	NA
UHGV-0044544_31	eggNOG-mapper	1201292.DR75_1511	NA	NA
UHGV-0044544_31	Pfam	PF17236	NA	DUF5309
UHGV-0044544_31	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0044544_32	PHROG	phrog_8832	NA	unknown function
UHGV-0044544_32	eggNOG-mapper	1201292.DR75_1510	NA	NA
UHGV-0044544_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0044544_33	eggNOG-mapper	1201292.DR75_1509	NA	NA
UHGV-0044544_34	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0044544_34	UniRef90	UniRef90_R3KCN7	50S ribosomal protein L23	NA
UHGV-0044544_34	eggNOG-mapper	1201292.DR75_1508	NA	NA
UHGV-0044544_34	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0044544_35	UniRef90	UniRef90_UPI0006672BAF	HK97 gp10 family phage protein	NA
UHGV-0044544_35	eggNOG-mapper	1201292.DR75_1507	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0044544_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0044544_35	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0044544_36	PHROG	phrog_525	NA	unknown function
UHGV-0044544_36	eggNOG-mapper	226185.EF_2006	NA	NA
UHGV-0044544_36	Pfam	PF20765	NA	DUF6838
UHGV-0044544_36	Structural annotation	PF20765	NA	NA
UHGV-0044544_37	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0044544_37	PHROG	phrog_88	major tail protein	tail
UHGV-0044544_37	UniRef90	UniRef90_A0A1J6YRG1	Ig-like domain-containing protein	NA
UHGV-0044544_37	eggNOG-mapper	226185.EF_2005	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0044544_37	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0044544_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0044544_37	COG	COG5492	NA	NA
UHGV-0044544_38	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0044544_38	eggNOG-mapper	226185.EF_2004	NA	NA
UHGV-0044544_39	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0044544_39	UniRef90	UniRef90_A0A640NQ37	Tail tape measure protein	NA
UHGV-0044544_39	eggNOG-mapper	1201292.DR75_1503	Phage tail tape measure protein, TP901 family	NA
UHGV-0044544_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0044544_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0044544_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0044544_39	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0044544_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0044544_40	UniRef90	UniRef90_Q833F7	Tail protein, putative	NA
UHGV-0044544_40	eggNOG-mapper	1201292.DR75_1502	phage tail	NA
UHGV-0044544_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0044544_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0044544_41	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0044544_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0044544_41	UniRef90	UniRef90_A0A828QNT0	Peptidase, M23 family	NA
UHGV-0044544_41	eggNOG-mapper	1201292.DR75_1501	Prophage endopeptidase tail	NA
UHGV-0044544_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0044544_41	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0044544_41	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0044544_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0044544_41	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0044544_41	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0044544_42	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0044544_42	UniRef90	UniRef90_E6EVF7	BppU_N domain-containing protein	NA
UHGV-0044544_42	eggNOG-mapper	226185.EF_2810	NA	NA
UHGV-0044544_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0044544_42	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0044544_43	PHROG	phrog_22125	NA	unknown function
UHGV-0044544_43	eggNOG-mapper	1201292.DR75_1499	NA	NA
UHGV-0044544_44	PHROG	phrog_6907	NA	unknown function
UHGV-0044544_44	eggNOG-mapper	169963.lmo0126	NA	NA
UHGV-0044544_45	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0044544_45	PHROG	phrog_19279	phosphodiesterase	other
UHGV-0044544_45	UniRef90	UniRef90_E6EVT5	Glycerophosphodiester phosphodiesterase family protein	NA
UHGV-0044544_45	eggNOG-mapper	1158609.I586_00096	glycerophosphoryl diester phosphodiesterase	NA
UHGV-0044544_45	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0044544_45	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0044544_46	PHROG	phrog_199	holin	lysis
UHGV-0044544_46	UniRef90	UniRef90_UPI00032E8426	phage holin family protein	NA
UHGV-0044544_46	eggNOG-mapper	1158602.I590_00633	Bacteriophage holin family	NA
UHGV-0044544_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0044544_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0044544_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0044544_47	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0044544_47	PHROG	phrog_291	endolysin	lysis
UHGV-0044544_47	UniRef90	UniRef90_D2IYY2	Lysozyme	NA
UHGV-0044544_47	eggNOG-mapper	673832.D2IYY2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0044544_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0044544_47	Pfam	PF01476	LysM domain	LysM
UHGV-0044544_47	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0044544_48	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0044544_48	PHROG	phrog_729	cold shock protein	other
UHGV-0044544_48	UniRef90	UniRef90_A0A2Z6BK42	Cold-shock protein	NA
UHGV-0044544_48	eggNOG-mapper	226185.EF_1991	Cold shock	NA
UHGV-0044544_48	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-0044544_48	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0044544_48	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0044544_48	Structural annotation	PF00313, NF007062, COG1278	NA	NA