UHGV-0044660

Genome information

Genome length 36,800 bps

CDS count 60

Completeness 96.39% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044660
vOTU ID	vOTU-009462
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5779
BioSample	SAMEA728899
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.7
Jumbo phage	No

Genome content
Genome length	36,800 bps
GC content	59.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.58%
Average CDS length	571.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044660_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0044660_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044660_1	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0044660_1	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0044660_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0044660_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0044660_1	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0044660_2	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0044660_2	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0044660_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0044660_2	Structural annotation	PF14205	NA	NA
UHGV-0044660_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044660_3	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0044660_3	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0044660_5	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0044660_6	PHROG	phrog_3136	NA	unknown function
UHGV-0044660_6	UniRef90	UniRef90_UPI001C00EDA4	ASCH domain-containing protein	NA
UHGV-0044660_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0044660_6	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0044660_8	Structural annotation	PF06657	NA	NA
UHGV-0044660_10	PHROG	phrog_7704	NA	unknown function
UHGV-0044660_10	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0044660_10	Pfam	PF04448	NA	DUF551
UHGV-0044660_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0044660_11	UniRef90	UniRef90_UPI0018AA1C50	single-stranded DNA-binding protein	NA
UHGV-0044660_11	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0044660_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0044660_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0044660_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0044660_13	PHROG	phrog_27290	NA	unknown function
UHGV-0044660_13	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0044660_13	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0044660_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0044660_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0044660_13	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0044660_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0044660_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0044660_14	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0044660_14	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0044660_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0044660_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0044660_14	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0044660_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0044660_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0044660_16	UniRef90	UniRef90_UPI001C0112E5	AAA family ATPase	NA
UHGV-0044660_16	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0044660_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0044660_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0044660_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0044660_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0044660_17	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0044660_17	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0044660_17	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0044660_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0044660_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0044660_17	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0044660_18	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0044660_18	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0044660_18	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0044660_18	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0044660_18	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0044660_18	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0044660_19	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0044660_20	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0044660_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044660_20	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0044660_20	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0044660_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044660_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044660_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0044660_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0044660_21	UniRef90	UniRef90_G4L1F8	Putative Xre family DNA-binding protein	NA
UHGV-0044660_21	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-0044660_21	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0044660_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044660_21	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0044660_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044660_24	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0044660_24	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0044660_25	KOfam	K14059	int; integrase	NA
UHGV-0044660_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0044660_25	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0044660_25	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0044660_25	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0044660_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044660_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044660_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0044660_26	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0044660_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0044660_31	PHROG	phrog_4709	NA	unknown function
UHGV-0044660_31	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-0044660_31	AcrCatalog	cluster_3300	NA	NA
UHGV-0044660_37	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0044660_37	PHROG	phrog_25567	NA	unknown function
UHGV-0044660_37	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0044660_37	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0044660_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044660_37	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0044660_38	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0044660_39	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0044660_39	PHROG	phrog_894	endolysin	lysis
UHGV-0044660_39	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0044660_39	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0044660_39	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0044660_39	COG	COG3108	NA	NA
UHGV-0044660_39	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0044660_40	PHROG	phrog_18955	NA	unknown function
UHGV-0044660_40	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0044660_40	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0044660_40	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0044660_40	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0044660_42	PHROG	phrog_13256	NA	unknown function
UHGV-0044660_42	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0044660_43	PHROG	phrog_4105	NA	unknown function
UHGV-0044660_43	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0044660_44	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0044660_44	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0044660_44	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0044660_45	PHROG	phrog_32744	NA	unknown function
UHGV-0044660_45	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0044660_45	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0044660_47	PHROG	phrog_23464	NA	unknown function
UHGV-0044660_47	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0044660_47	COG	COG5412	Phage-related protein	NA
UHGV-0044660_47	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0044660_49	PHROG	phrog_88	major tail protein	tail
UHGV-0044660_49	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0044660_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0044660_50	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0044660_50	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0044660_50	Structural annotation	TIGR01725	NA	NA
UHGV-0044660_51	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0044660_51	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0044660_51	Structural annotation	PF05657	NA	NA
UHGV-0044660_52	PHROG	phrog_25	head closure Hc1	connector
UHGV-0044660_52	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0044660_52	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0044660_52	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0044660_52	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0044660_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0044660_53	UniRef90	UniRef90_UPI0010315EA4	phage gp6-like head-tail connector protein	NA
UHGV-0044660_53	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0044660_53	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0044660_53	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0044660_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0044660_54	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0044660_54	eggNOG-mapper	1236976.JCM16418_795	Phage capsid family	NA
UHGV-0044660_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0044660_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0044660_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0044660_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0044660_55	PHROG	phrog_16951	NA	unknown function
UHGV-0044660_55	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0044660_55	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0044660_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0044660_56	UniRef90	UniRef90_A0A845R2J9	Phage portal protein	NA
UHGV-0044660_56	eggNOG-mapper	397288.C806_01508	Phage portal protein	NA
UHGV-0044660_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0044660_56	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0044660_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0044660_56	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0044660_58	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0044660_58	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0044660_58	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0044660_58	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0044660_58	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0044660_58	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0044660_58	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0044660_59	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0044660_59	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0044660_59	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0044660_59	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0044660_59	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0044660_59	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0044660_59	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0044660_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0044660_60	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0044660_60	UniRef90	UniRef90_A0A1V5IAX9	Methyltransferase	NA
UHGV-0044660_60	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0044660_60	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0044660_60	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0044660_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0044660_60	COG	COG0863	DNA modification methylase	NA
UHGV-0044660_60	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA