UHGV-0044711

Genome information

Genome length 24,727 bps

CDS count 32

Completeness 62.69% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044711
vOTU ID	vOTU-017023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_1443
BioSample	SAMD00036404
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.17
Jumbo phage	No

Genome content
Genome length	24,727 bps
GC content	43.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	90.19%
Average CDS length	701.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044711_3	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0044711_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0044711_3	UniRef90	UniRef90_UPI00189794A7	tyrosine-type recombinase/integrase	NA
UHGV-0044711_3	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0044711_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0044711_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044711_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0044711_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0044711_5	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0044711_5	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0044711_6	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0044711_6	COG	COG4926	Phage-related protein	NA
UHGV-0044711_7	PHROG	phrog_16267	NA	unknown function
UHGV-0044711_7	UniRef90	UniRef90_UPI001C10B551	tail fiber domain-containing protein	NA
UHGV-0044711_7	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0044711_7	COG	COG4926	Phage-related protein	NA
UHGV-0044711_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0044711_8	PHROG	phrog_1401	NA	unknown function
UHGV-0044711_8	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0044711_8	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0044711_8	Structural annotation	PF07761	NA	NA
UHGV-0044711_9	PHROG	phrog_2566	NA	unknown function
UHGV-0044711_9	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0044711_9	eggNOG-mapper	203120.LEUM_1633	NA	NA
UHGV-0044711_10	PHROG	phrog_1194	NA	unknown function
UHGV-0044711_10	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0044711_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0044711_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0044711_11	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0044711_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0044711_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0044711_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0044711_13	PHROG	phrog_8355	NA	unknown function
UHGV-0044711_13	UniRef90	UniRef90_UPI001C031F13	Gp15 family bacteriophage protein	NA
UHGV-0044711_13	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0044711_14	PHROG	phrog_8300	NA	unknown function
UHGV-0044711_14	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0044711_14	Structural annotation	PF06854	NA	NA
UHGV-0044711_15	PHROG	phrog_820	major tail protein	tail
UHGV-0044711_15	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0044711_15	Structural annotation	PF06199, TIGR02241, COG5437	NA	NA
UHGV-0044711_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0044711_16	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0044711_16	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0044711_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0044711_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0044711_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0044711_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0044711_18	PHROG	phrog_8710	NA	unknown function
UHGV-0044711_18	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0044711_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0044711_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0044711_19	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0044711_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0044711_20	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0044711_20	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0044711_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0044711_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0044711_21	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0044711_24	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0044711_24	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0044711_24	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0044711_25	UniRef90	UniRef90_A0A1Y4VHQ3	Transposase	NA
UHGV-0044711_25	eggNOG-mapper	936596.HMPREF1495_0345	NA	NA
UHGV-0044711_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0044711_26	UniRef90	UniRef90_A0A1C5YZ21	Phage minor capsid protein 2	NA
UHGV-0044711_26	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0044711_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0044711_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0044711_26	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0044711_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0044711_27	UniRef90	UniRef90_A0A1C5YZW6	Phage portal protein, putative, A118 family	NA
UHGV-0044711_27	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0044711_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0044711_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0044711_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0044711_28	UniRef90	UniRef90_A0A417CQ07	Terminase	NA
UHGV-0044711_28	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0044711_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0044711_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0044711_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0044711_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0044711_29	UniRef90	UniRef90_A0A417CPY2	Terminase small subunit	NA
UHGV-0044711_29	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0044711_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0044711_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0044711_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0044711_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0044711_31	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0044711_31	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0044711_31	Structural annotation	PF02996	NA	NA
UHGV-0044711_32	PHROG	phrog_19011	NA	unknown function
UHGV-0044711_32	Structural annotation	PF17516, COG4466	NA	NA