UHGV-0044769

Genome information

Genome length 31,843 bps

CDS count 52

Completeness 73.09% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044769
vOTU ID	vOTU-037585
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_7638
BioSample	SAMEA2042444
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.17
Jumbo phage	No

Genome content
Genome length	31,843 bps
GC content	46.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.04%
Average CDS length	555.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044769_1	eggNOG-mapper	693746.OBV_03590	NA	NA
UHGV-0044769_2	UniRef90	UniRef90_UPI001F265658	virulence RhuM family protein	NA
UHGV-0044769_2	eggNOG-mapper	877411.JMMA01000002_gene2861	Virulence protein RhuM family	NA
UHGV-0044769_2	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0044769_2	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-0044769_4	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0044769_4	PHROG	phrog_8036	NA	unknown function
UHGV-0044769_4	UniRef90	UniRef90_A0A3C1INR2	Damage-inducible protein D	NA
UHGV-0044769_4	eggNOG-mapper	340.xcc-b100_1250	BRO family, N-terminal domain	NA
UHGV-0044769_4	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0044769_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044769_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0044769_4	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0044769_5	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0044769_5	UniRef90	UniRef90_A0A316S905	DNA-binding protein	NA
UHGV-0044769_5	eggNOG-mapper	653733.Selin_1708	AntA/AntB antirepressor	NA
UHGV-0044769_5	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0044769_5	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0044769_5	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0044769_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0044769_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044769_6	UniRef90	UniRef90_UPI001D020EF9	helix-turn-helix transcriptional regulator	NA
UHGV-0044769_6	eggNOG-mapper	1444310.JANV01000024_gene1355	Peptidase S24-like	NA
UHGV-0044769_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044769_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0044769_6	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0044769_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0044769_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0044769_7	UniRef90	UniRef90_R6XZB2	HTH cro/C1-type domain-containing protein	NA
UHGV-0044769_7	eggNOG-mapper	632245.CLP_2950	Helix-turn-helix XRE-family like proteins	NA
UHGV-0044769_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044769_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044769_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0044769_8	Structural annotation	PF13033	NA	NA
UHGV-0044769_10	PHROG	phrog_21028	NA	unknown function
UHGV-0044769_10	eggNOG-mapper	875454.BAEW01000002_gene506	NA	NA
UHGV-0044769_10	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0044769_12	PHROG	phrog_16447	NA	unknown function
UHGV-0044769_12	UniRef90	UniRef90_A0A6B4D0N8	NA	NA
UHGV-0044769_12	eggNOG-mapper	272562.CA_C1943	NA	NA
UHGV-0044769_12	Pfam	PF10083	NA	DUF2321
UHGV-0044769_12	COG	COG4306	NA	NA
UHGV-0044769_12	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0044769_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0044769_14	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0044769_14	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0044769_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0044769_16	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0044769_16	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0044769_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0044769_16	Structural annotation	PF05565	NA	NA
UHGV-0044769_17	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044769_17	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0044769_17	eggNOG-mapper	69279.BG36_21015	protein involved in exopolysaccharide biosynthesis	NA
UHGV-0044769_17	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0044769_17	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0044769_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0044769_18	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0044769_18	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0044769_19	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0044769_19	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0044769_19	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0044769_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0044769_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0044769_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0044769_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0044769_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0044769_20	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0044769_20	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0044769_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0044769_20	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0044769_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0044769_20	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0044769_21	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044769_21	UniRef90	UniRef90_A0A2W4GH61	HNH endonuclease	NA
UHGV-0044769_21	eggNOG-mapper	60520.HR47_11980	NA	NA
UHGV-0044769_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-0044769_23	UniRef90	UniRef90_UPI001C3C4347	NA	NA
UHGV-0044769_23	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0044769_23	Pfam	PF11753	NA	DUF3310
UHGV-0044769_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0044769_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044769_25	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0044769_25	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0044769_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0044769_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0044769_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0044769_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0044769_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0044769_27	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044769_27	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0044769_27	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0044769_27	Pfam	PF06356	NA	DUF1064
UHGV-0044769_27	Structural annotation	PF06356	NA	NA
UHGV-0044769_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0044769_28	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0044769_28	eggNOG-mapper	1235799.C818_01032	NA	NA
UHGV-0044769_28	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0044769_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0044769_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0044769_29	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0044769_30	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0044769_30	eggNOG-mapper	1123288.SOV_2c10530	NA	NA
UHGV-0044769_30	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0044769_30	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0044769_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0044769_32	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0044769_32	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0044769_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0044769_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0044769_32	COG	COG5410	NA	NA
UHGV-0044769_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0044769_33	PHROG	phrog_145	portal protein	head and packaging
UHGV-0044769_33	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0044769_33	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0044769_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044769_34	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0044769_34	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0044769_34	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0044769_34	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0044769_35	PHROG	phrog_19468	NA	unknown function
UHGV-0044769_35	UniRef90	UniRef90_A0A8B0KHC3	Ntox50 domain-containing protein	NA
UHGV-0044769_35	eggNOG-mapper	1298920.KI911353_gene4854	Phage minor capsid protein 2	NA
UHGV-0044769_35	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0044769_35	COG	COG2369	NA	NA
UHGV-0044769_36	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0044769_37	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0044769_37	Structural annotation	PF06810	NA	NA
UHGV-0044769_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0044769_38	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0044769_38	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0044769_38	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0044769_38	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0044769_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0044769_39	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0044769_39	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0044769_39	Structural annotation	TIGR01725	NA	NA
UHGV-0044769_40	eggNOG-mapper	1273103.NM10_06776	NA	NA
UHGV-0044769_41	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0044769_41	eggNOG-mapper	1111454.HMPREF1250_1050	NA	NA
UHGV-0044769_41	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0044769_42	PHROG	phrog_1407	major tail protein	tail
UHGV-0044769_42	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0044769_42	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-0044769_42	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0044769_42	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0044769_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0044769_43	Structural annotation	PF11836	NA	NA
UHGV-0044769_45	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0044769_45	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0044769_45	eggNOG-mapper	1273103.NM10_06751	tape measure	NA
UHGV-0044769_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0044769_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0044769_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0044769_45	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0044769_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0044769_46	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0044769_46	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0044769_46	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0044769_47	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0044769_47	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0044769_48	PHROG	phrog_13336	NA	unknown function
UHGV-0044769_48	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0044769_49	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0044769_49	Structural annotation	PF14301	NA	NA
UHGV-0044769_50	eggNOG-mapper	665956.HMPREF1032_00696	NA	NA
UHGV-0044769_50	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0044769_51	PHROG	phrog_31538	NA	unknown function
UHGV-0044769_51	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0044769_52	PHROG	phrog_13589	NA	unknown function
UHGV-0044769_52	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA