UHGV-0044776

Genome information

Genome length 21,184 bps

CDS count 30

Completeness 54.30% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044776
vOTU ID	vOTU-036180
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_11308
BioSample	SAMEA2042430
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.67
Jumbo phage	No

Genome content
Genome length	21,184 bps
GC content	41.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	91.41%
Average CDS length	649.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044776_1	eggNOG-mapper	515620.EUBELI_01769	NA	NA
UHGV-0044776_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0044776_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0044776_2	UniRef90	UniRef90_C4Z3T5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0044776_2	eggNOG-mapper	515620.EUBELI_01770	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0044776_2	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0044776_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0044776_2	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0044776_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0044776_2	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0044776_3	UniRef90	UniRef90_S0J252	N6_N4_Mtase domain-containing protein	NA
UHGV-0044776_3	eggNOG-mapper	515620.EUBELI_01771	DNA methylase	NA
UHGV-0044776_3	PADLOC	MTase_II_00162	Type II methyltransferase	RM
UHGV-0044776_3	COG	COG0863	DNA modification methylase	NA
UHGV-0044776_4	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0044776_4	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0044776_4	UniRef90	UniRef90_B0G6I6	DNA-binding helix-turn-helix protein	NA
UHGV-0044776_4	eggNOG-mapper	411461.DORFOR_01970	Helix-turn-helix XRE-family like proteins	NA
UHGV-0044776_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0044776_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044776_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044776_5	UniRef90	UniRef90_A0A0D0S966	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0044776_5	eggNOG-mapper	742735.HMPREF9467_03105	NA	NA
UHGV-0044776_6	PHROG	phrog_3941	NA	unknown function
UHGV-0044776_6	eggNOG-mapper	298386.PBPRB0556	NA	NA
UHGV-0044776_7	PHROG	phrog_31146	NA	unknown function
UHGV-0044776_7	UniRef90	UniRef90_G2T0K0	Mobilization protein	NA
UHGV-0044776_7	eggNOG-mapper	585394.RHOM_02050	NA	NA
UHGV-0044776_7	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-0044776_7	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0044776_8	KOfam	K04485	radA, sms; DNA repair protein RadA/Sms	NA
UHGV-0044776_8	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0044776_8	UniRef90	UniRef90_G2T0J9	AAA domain-containing protein	NA
UHGV-0044776_8	eggNOG-mapper	585394.RHOM_02045	NA	NA
UHGV-0044776_8	Pfam	PF13481	AAA domain	AAA_25
UHGV-0044776_8	COG	COG3598	RecA-family ATPase	NA
UHGV-0044776_8	Structural annotation	PF00154, PF07848, MF_01498, MF_00173, TIGR00416, NF033789, COG3598	NA	NA
UHGV-0044776_9	PHROG	phrog_6058	NA	unknown function
UHGV-0044776_9	eggNOG-mapper	585394.RHOM_02040	NA	NA
UHGV-0044776_10	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0044776_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044776_10	UniRef90	UniRef90_A0A0M6WTT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0044776_10	eggNOG-mapper	585394.RHOM_02035	DNA-binding helix-turn-helix protein	NA
UHGV-0044776_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0044776_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044776_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0044776_11	KOfam	K14059	int; integrase	NA
UHGV-0044776_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0044776_11	UniRef90	UniRef90_A0A0M6WRE3	Tyr recombinase domain-containing protein	NA
UHGV-0044776_11	eggNOG-mapper	585394.RHOM_02030	Belongs to the 'phage' integrase family	NA
UHGV-0044776_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044776_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044776_11	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0044776_13	PHROG	phrog_33061	NA	unknown function
UHGV-0044776_13	eggNOG-mapper	411468.CLOSCI_01514	NA	NA
UHGV-0044776_13	Structural annotation	PF19087	NA	NA
UHGV-0044776_14	PHROG	phrog_14030	NA	unknown function
UHGV-0044776_14	UniRef90	UniRef90_A0A174ZPS4	Bacterial SH3 domain	NA
UHGV-0044776_14	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0044776_14	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0044776_14	Structural annotation	PF14627	NA	NA
UHGV-0044776_16	PHROG	phrog_36029	NA	unknown function
UHGV-0044776_16	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0044776_16	eggNOG-mapper	742741.HMPREF9475_00444	NA	NA
UHGV-0044776_16	Structural annotation	PF09682	NA	NA
UHGV-0044776_17	PHROG	phrog_33302	NA	unknown function
UHGV-0044776_17	eggNOG-mapper	742741.HMPREF9475_00443	NA	NA
UHGV-0044776_18	PHROG	phrog_1863	NA	unknown function
UHGV-0044776_18	UniRef90	UniRef90_A0A7W3SWZ2	Peptidoglycan hydrolase CwlO-like protein	NA
UHGV-0044776_18	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-0044776_19	PHROG	phrog_29601	NA	unknown function
UHGV-0044776_19	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-0044776_20	PHROG	phrog_134	NA	unknown function
UHGV-0044776_20	UniRef90	UniRef90_A0A414EC84	XkdX family protein	NA
UHGV-0044776_20	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0044776_20	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0044776_20	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0044776_20	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0044776_21	PHROG	phrog_20201	NA	unknown function
UHGV-0044776_22	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0044776_22	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0044776_22	UniRef90	UniRef90_A0A412T739	Reverse transcriptase domain-containing protein	NA
UHGV-0044776_22	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0044776_22	PADLOC	drt-UG2	DRT	DRT
UHGV-0044776_22	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0044776_22	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0044776_22	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0044776_23	PHROG	phrog_5302	tail protein	tail
UHGV-0044776_23	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0044776_23	Structural annotation	COG1262	NA	NA
UHGV-0044776_24	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0044776_25	PHROG	phrog_31398	NA	unknown function
UHGV-0044776_25	UniRef90	UniRef90_A0A350S494	BppU_N domain-containing protein	NA
UHGV-0044776_25	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0044776_25	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0044776_25	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0044776_28	PHROG	phrog_18110	NA	unknown function
UHGV-0044776_28	UniRef90	UniRef90_A0A350S491	Prophage_tail domain-containing protein	NA
UHGV-0044776_28	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0044776_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0044776_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0044776_28	COG	COG4926	Phage-related protein	NA
UHGV-0044776_28	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0044776_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0044776_29	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0044776_29	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0044776_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0044776_29	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0044776_30	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-0044776_30	PHROG	phrog_17020	NA	unknown function
UHGV-0044776_30	UniRef90	UniRef90_A0A1C5T6M3	Phage-related minor tail protein	NA
UHGV-0044776_30	eggNOG-mapper	411468.CLOSCI_01499	Phage tail tape measure protein, TP901 family	NA
UHGV-0044776_30	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA