UHGV-0044824

Genome information

Genome length 17,259 bps

CDS count 22

Completeness 80.48% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044824
vOTU ID	vOTU-036169
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_15747
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.84
Jumbo phage	No

Genome content
Genome length	17,259 bps
GC content	35.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	90.43%
Average CDS length	712.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044824_1	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0044824_1	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0044824_1	UniRef90	UniRef90_UPI001958A84B	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0044824_1	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0044824_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0044824_1	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0044824_2	COG	COG5272	Ubiquitin	NA
UHGV-0044824_3	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0044824_4	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0044824_4	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0044824_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0044824_5	UniRef90	UniRef90_A0A514AAQ6	Upper collar protein	NA
UHGV-0044824_5	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0044824_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0044824_5	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0044824_6	PHROG	phrog_2248	tail protein	tail
UHGV-0044824_6	UniRef90	UniRef90_A0A345MZG4	Tail protein	NA
UHGV-0044824_6	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0044824_6	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0044824_6	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0044824_6	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0044824_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0044824_7	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0044824_7	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0044824_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0044824_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0044824_10	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0044824_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0044824_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0044824_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0044824_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0044824_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0044824_11	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0044824_11	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0044824_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0044824_11	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0044824_12	Structural annotation	PF05435	NA	NA
UHGV-0044824_13	Structural annotation	PF05464	NA	NA
UHGV-0044824_14	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044824_14	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-0044824_14	eggNOG-mapper	513550.B6RT34_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0044824_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0044824_14	Structural annotation	PF17427	NA	NA
UHGV-0044824_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0044824_16	PHROG	phrog_435	endolysin	lysis
UHGV-0044824_16	UniRef90	UniRef90_UPI000AF7280E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0044824_16	eggNOG-mapper	697281.Mahau_0598	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0044824_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0044824_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0044824_21	PHROG	phrog_871	NA	unknown function
UHGV-0044824_21	eggNOG-mapper	1340810.V5USI5_9CAUD	NA	NA