UHGV-0044897

Genome information

Genome length 49,950 bps

CDS count 85

Completeness 100.00% (complete)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044897
vOTU ID	vOTU-001019
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_6610
BioSample	SAMEA2042579
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.7
Jumbo phage	No

Genome content
Genome length	49,950 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	88.36%
Average CDS length	523.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044897_3	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0044897_3	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0044897_3	UniRef90	UniRef90_Q853W3	FtsK domain-containing protein	NA
UHGV-0044897_3	eggNOG-mapper	861360.AARI_10960	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0044897_3	PADLOC	SspH_00004	SspH	SSP
UHGV-0044897_3	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0044897_3	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0044897_3	Structural annotation	PF01580, PF17854, MF_01076, NF041214, COG0433	NA	NA
UHGV-0044897_4	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0044897_7	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044897_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0044897_10	PHROG	phrog_8684	NA	unknown function
UHGV-0044897_10	UniRef90	UniRef90_A0A6L6LBC5	YopX domain-containing protein	NA
UHGV-0044897_10	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0044897_10	Pfam	PF09643	YopX protein	YopX
UHGV-0044897_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0044897_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0044897_14	UniRef90	UniRef90_A0A7C6K810	NA	NA
UHGV-0044897_14	Structural annotation	PF18892	NA	NA
UHGV-0044897_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0044897_18	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0044897_18	UniRef90	UniRef90_A0A7J9PL94	Type II methyltransferase	NA
UHGV-0044897_18	eggNOG-mapper	1335760.ASTG01000033_gene36	N-4 methylation of cytosine	NA
UHGV-0044897_18	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0044897_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0044897_18	COG	COG0863	DNA modification methylase	NA
UHGV-0044897_18	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0044897_23	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0044897_23	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0044897_23	UniRef90	UniRef90_UPI001AEAF86F	AAA family ATPase	NA
UHGV-0044897_23	eggNOG-mapper	445973.CLOBAR_02330	DNA helicase	NA
UHGV-0044897_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0044897_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0044897_23	Structural annotation	PF03796, MF_04154, NF006443, COG0305	NA	NA
UHGV-0044897_26	PHROG	phrog_335	phosphatase	other
UHGV-0044897_26	UniRef90	UniRef90_UPI00067E78B7	macro domain-containing protein	NA
UHGV-0044897_26	eggNOG-mapper	1235799.C818_02572	Macro domain	NA
UHGV-0044897_26	PADLOC	darG	NA	NA
UHGV-0044897_26	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0044897_26	Structural annotation	PF20016, MF_01205, NF001666, COG2110	NA	NA
UHGV-0044897_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0044897_30	eggNOG-mapper	1123302.KB904167_gene507	NA	NA
UHGV-0044897_32	PHROG	phrog_3136	NA	unknown function
UHGV-0044897_32	UniRef90	UniRef90_UPI001C00EDA4	ASCH domain-containing protein	NA
UHGV-0044897_32	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0044897_33	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044897_33	eggNOG-mapper	742767.HMPREF9456_02044	NA	NA
UHGV-0044897_33	Structural annotation	PF17375	NA	NA
UHGV-0044897_34	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0044897_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0044897_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0044897_35	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0044897_35	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0044897_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0044897_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0044897_35	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0044897_36	PHROG	phrog_17284	NA	unknown function
UHGV-0044897_36	UniRef90	UniRef90_A0A3D2D5S6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0044897_36	eggNOG-mapper	742735.HMPREF9467_00858	C-5 cytosine-specific DNA methylase	NA
UHGV-0044897_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0044897_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044897_37	UniRef90	UniRef90_UPI001C0F6E31	DNA cytosine methyltransferase	NA
UHGV-0044897_37	eggNOG-mapper	742735.HMPREF9467_00858	C-5 cytosine-specific DNA methylase	NA
UHGV-0044897_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0044897_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0044897_39	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0044897_39	UniRef90	UniRef90_A0A1Q6JRV7	Modification methylase MunI	NA
UHGV-0044897_39	eggNOG-mapper	1519439.JPJG01000059_gene1907	Belongs to the MT-A70-like family	NA
UHGV-0044897_39	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0044897_39	Pfam	PF05063	MT-A70	MT-A70
UHGV-0044897_39	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0044897_40	KOfam	K23960	METTL14; mRNA m6A methyltransferase non-catalytic subunit	NA
UHGV-0044897_40	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0044897_40	UniRef90	UniRef90_C4Z5Z5	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0044897_40	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0044897_40	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0044897_40	Pfam	PF05063	MT-A70	MT-A70
UHGV-0044897_40	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0044897_41	PHROG	phrog_4973	NA	unknown function
UHGV-0044897_41	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0044897_41	eggNOG-mapper	880073.Calab_0752	Helix-turn-helix domain	NA
UHGV-0044897_41	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0044897_41	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0044897_42	PHROG	phrog_19106	NA	unknown function
UHGV-0044897_42	UniRef90	UniRef90_A0A1C5S1S5	Group I intron endonuclease	NA
UHGV-0044897_42	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0044897_42	Structural annotation	TIGR01453	NA	NA
UHGV-0044897_45	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044897_45	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0044897_45	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0044897_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0044897_46	UniRef90	UniRef90_A0A3R7NVY9	Siphovirus Gp157 family protein	NA
UHGV-0044897_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0044897_46	Structural annotation	PF05565	NA	NA
UHGV-0044897_49	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0044897_52	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0044897_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0044897_53	PHROG	phrog_16490	NA	unknown function
UHGV-0044897_53	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0044897_66	PHROG	phrog_7389	tail fiber protein	tail
UHGV-0044897_66	UniRef90	UniRef90_A0A172Q097	Tail fiber protein	NA
UHGV-0044897_66	eggNOG-mapper	235909.GK0543	tail collar domain protein	NA
UHGV-0044897_66	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0044897_69	Pfam	PF19789	NA	DUF6273
UHGV-0044897_69	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0044897_70	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0044897_71	COG	COG1511	NA	NA
UHGV-0044897_74	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-0044897_74	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0044897_75	Structural annotation	PF06141	NA	NA
UHGV-0044897_77	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0044897_79	PHROG	phrog_29	major head protein	head and packaging
UHGV-0044897_79	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0044897_79	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0044897_79	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0044897_79	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0044897_80	PHROG	phrog_909	major head protein	head and packaging
UHGV-0044897_82	PHROG	phrog_64	portal protein	head and packaging
UHGV-0044897_82	UniRef90	UniRef90_A0A7X7EMS9	Phage portal protein	NA
UHGV-0044897_82	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0044897_82	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0044897_82	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044897_83	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0044897_83	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0044897_83	COG	COG5410	NA	NA
UHGV-0044897_83	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA