UHGV-0044921

Genome information

Genome length 45,921 bps

CDS count 69

Completeness 98.95% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0044921
vOTU ID	vOTU-068303
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2410
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.9
Jumbo phage	No

Genome content
Genome length	45,921 bps
GC content	34.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	88.50%
Average CDS length	591.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0044921_1	KOfam	K14059	int; integrase	NA
UHGV-0044921_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0044921_1	UniRef90	UniRef90_A8RCT4	Site-specific recombinase, phage integrase family	NA
UHGV-0044921_1	eggNOG-mapper	428127.EUBDOL_01497	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0044921_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0044921_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0044921_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0044921_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0044921_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0044921_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0044921_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0044921_2	UniRef90	UniRef90_A8RCT6	DNA-binding helix-turn-helix protein	NA
UHGV-0044921_2	eggNOG-mapper	428127.EUBDOL_01498	sequence-specific DNA binding	NA
UHGV-0044921_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0044921_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044921_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044921_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0044921_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0044921_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0044921_3	UniRef90	UniRef90_A8RCT7	Peptidase S24-like protein	NA
UHGV-0044921_3	eggNOG-mapper	428127.EUBDOL_01499	NA	NA
UHGV-0044921_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044921_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0044921_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0044921_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0044921_4	UniRef90	UniRef90_A8RCT9	HTH cro/C1-type domain-containing protein	NA
UHGV-0044921_4	eggNOG-mapper	1460635.JCM19038_1783	Helix-turn-helix XRE-family like proteins	NA
UHGV-0044921_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0044921_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0044921_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0044921_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044921_10	UniRef90	UniRef90_A8RCU7	YqaJ viral recombinase family protein	NA
UHGV-0044921_10	eggNOG-mapper	428127.EUBDOL_01507	YqaJ-like viral recombinase domain	NA
UHGV-0044921_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0044921_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0044921_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0044921_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0044921_11	PHROG	phrog_674	NA	unknown function
UHGV-0044921_11	UniRef90	UniRef90_A0A417JGK8	NA	NA
UHGV-0044921_11	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0044921_11	Pfam	PF07083	NA	DUF1351
UHGV-0044921_11	Structural annotation	PF07083	NA	NA
UHGV-0044921_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0044921_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0044921_12	UniRef90	UniRef90_A8RCV0	Recombinase, phage RecT family	NA
UHGV-0044921_12	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0044921_12	Pfam	PF03837	RecT family	RecT
UHGV-0044921_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0044921_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0044921_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0044921_13	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0044921_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0044921_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0044921_14	UniRef90	UniRef90_A8RCV3	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0044921_14	eggNOG-mapper	428127.EUBDOL_01511	Endodeoxyribonuclease RusA	NA
UHGV-0044921_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0044921_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0044921_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0044921_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0044921_15	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0044921_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0044921_15	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0044921_16	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0044921_16	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0044921_16	AcrCatalog	cluster_47493	NA	NA
UHGV-0044921_16	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0044921_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0044921_17	eggNOG-mapper	428127.EUBDOL_01514	NA	NA
UHGV-0044921_17	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0044921_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0044921_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0044921_18	UniRef90	UniRef90_A8RCV8	Single-stranded DNA-binding protein	NA
UHGV-0044921_18	eggNOG-mapper	428127.EUBDOL_01515	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0044921_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0044921_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0044921_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0044921_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0044921_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0044921_20	Structural annotation	PF17399	NA	NA
UHGV-0044921_21	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-0044921_27	Structural annotation	PF04319, TIGR00686	NA	NA
UHGV-0044921_28	Structural annotation	PF08281, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0044921_32	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0044921_32	UniRef90	UniRef90_A8RCX5	Phage regulatory protein, Rha family	NA
UHGV-0044921_32	eggNOG-mapper	428127.EUBDOL_01529	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0044921_32	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0044921_32	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0044921_32	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0044921_32	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0044921_32	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0044921_33	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0044921_33	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0044921_33	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0044921_33	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0044921_33	Structural annotation	MF_01114, NF001062, COG2137	NA	NA
UHGV-0044921_34	UniRef90	UniRef90_UPI000E53DD23	CopG family transcriptional regulator	NA
UHGV-0044921_37	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0044921_37	UniRef90	UniRef90_A8RCY1	BRO family, N-terminal domain protein	NA
UHGV-0044921_37	eggNOG-mapper	428127.EUBDOL_01534	ORF6C domain	NA
UHGV-0044921_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0044921_37	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0044921_37	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0044921_37	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0044921_38	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0044921_38	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0044921_38	UniRef90	UniRef90_A8RCY2	Resolvase, N-terminal domain protein	NA
UHGV-0044921_38	eggNOG-mapper	428127.EUBDOL_01535	resolvase	NA
UHGV-0044921_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0044921_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0044921_39	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0044921_39	UniRef90	UniRef90_UPI000554DE5B	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0044921_39	eggNOG-mapper	428127.EUBDOL_01536	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0044921_39	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0044921_39	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0044921_40	PHROG	phrog_1281	NA	unknown function
UHGV-0044921_40	UniRef90	UniRef90_A8RCY4	NA	NA
UHGV-0044921_40	eggNOG-mapper	428127.EUBDOL_01537	NA	NA
UHGV-0044921_40	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0044921_40	COG	COG3600	NA	NA
UHGV-0044921_40	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0044921_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0044921_42	PHROG	phrog_4534	NA	unknown function
UHGV-0044921_50	PHROG	phrog_4758	terminase large subunit	head and packaging
UHGV-0044921_51	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0044921_51	UniRef90	UniRef90_A8RD01	NUMOD1 domain protein	NA
UHGV-0044921_51	eggNOG-mapper	428127.EUBDOL_01550	HNH endonuclease domain protein	NA
UHGV-0044921_51	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0044921_51	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0044921_51	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0044921_51	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0044921_52	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0044921_52	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0044921_52	COG	COG5410	NA	NA
UHGV-0044921_52	Structural annotation	PF17289, MF_04147, NF033889, COG5362	NA	NA
UHGV-0044921_53	PHROG	phrog_64	portal protein	head and packaging
UHGV-0044921_53	UniRef90	UniRef90_A8RD03	Putative phage portal protein, SPP1 family	NA
UHGV-0044921_53	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0044921_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0044921_53	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0044921_55	PHROG	phrog_544	major head protein	head and packaging
UHGV-0044921_55	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0044921_55	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0044921_57	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0044921_58	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0044921_59	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0044921_60	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0044921_63	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0044921_63	UniRef90	UniRef90_A8RD17	Cation diffusion facilitator family transporter	NA
UHGV-0044921_63	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0044921_63	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0044921_64	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0044921_65	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0044921_65	PHROG	phrog_10693	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0044921_65	UniRef90	UniRef90_A8RD19	Carbohydrate binding domain protein	NA
UHGV-0044921_65	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-0044921_65	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0044921_65	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0044921_65	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0044921_66	PHROG	phrog_372	tail protein	tail
UHGV-0044921_66	UniRef90	UniRef90_R7G8N6	Peptidase S74 domain-containing protein	NA
UHGV-0044921_66	eggNOG-mapper	428127.EUBDOL_01566	domain, Protein	NA
UHGV-0044921_66	Pfam	PF05895	NA	DUF859
UHGV-0044921_66	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0044921_66	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0044921_66	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0044921_67	PHROG	phrog_1129	holin	lysis
UHGV-0044921_67	UniRef90	UniRef90_A0A1G8HCP6	Phage holin family Hol44, holin superfamily V	NA
UHGV-0044921_67	eggNOG-mapper	428127.EUBDOL_01567	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0044921_67	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0044921_67	Structural annotation	PF06946	NA	NA
UHGV-0044921_68	PHROG	phrog_937	hemolysin	other
UHGV-0044921_68	eggNOG-mapper	428127.EUBDOL_01568	NA	NA
UHGV-0044921_69	PHROG	phrog_11037	NA	unknown function
UHGV-0044921_69	UniRef90	UniRef90_A8RD24	SH3 domain protein	NA
UHGV-0044921_69	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0044921_69	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0044921_69	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA