UHGV-0045029

Genome information

Genome length 21,345 bps

CDS count 34

Completeness 52.58% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045029
vOTU ID	vOTU-037656
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3003
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.59
Jumbo phage	No

Genome content
Genome length	21,345 bps
GC content	63.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	86.13%
Average CDS length	542.91 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045029_1	UniRef90	UniRef90_A0A1X2ZMI0	DNA-binding protein	NA
UHGV-0045029_1	eggNOG-mapper	398513.BBNG_00822	NA	NA
UHGV-0045029_3	eggNOG-mapper	398513.BBNG_00824	NA	NA
UHGV-0045029_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0045029_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045029_5	UniRef90	UniRef90_A0A0H3E9U2	Single-stranded DNA-binding protein	NA
UHGV-0045029_5	eggNOG-mapper	702459.BBPR_0890	Single-strand binding protein family	NA
UHGV-0045029_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0045029_5	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0045029_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0045029_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0045029_5	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0045029_6	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0045029_6	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0045029_6	UniRef90	UniRef90_A0A0H3ECI4	ParB Chromosome partitioning protein	NA
UHGV-0045029_6	eggNOG-mapper	702459.BBPR_0891	ParB-like nuclease domain	NA
UHGV-0045029_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0045029_6	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0045029_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0045029_6	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0045029_7	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0045029_7	UniRef90	UniRef90_A0A173YWP6	Cryptic prophage protein	NA
UHGV-0045029_7	eggNOG-mapper	398513.BBNG_00828	Transcriptional regulator	NA
UHGV-0045029_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0045029_7	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0045029_7	Structural annotation	PF01978, TIGR01610, COG5529	NA	NA
UHGV-0045029_8	eggNOG-mapper	398513.BBNG_00829	NA	NA
UHGV-0045029_9	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045029_9	UniRef90	UniRef90_A0A0B5BGU1	Restriction endonuclease	NA
UHGV-0045029_9	eggNOG-mapper	398513.BBNG_00830	HNH endonuclease	NA
UHGV-0045029_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045029_10	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0045029_10	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0045029_10	UniRef90	UniRef90_UPI000E416F79	oligoribonuclease	NA
UHGV-0045029_10	eggNOG-mapper	702459.BBPR_0895	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0045029_10	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0045029_10	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0045029_11	UniRef90	UniRef90_UPI001E3BBD80	Lar family restriction alleviation protein	NA
UHGV-0045029_11	Structural annotation	TIGR03655	NA	NA
UHGV-0045029_12	PHROG	phrog_3641	NA	unknown function
UHGV-0045029_12	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0045029_13	PHROG	phrog_21636	NA	unknown function
UHGV-0045029_13	Structural annotation	PF13384, NF040785, COG2771	NA	NA
UHGV-0045029_14	PHROG	phrog_908	NA	unknown function
UHGV-0045029_14	UniRef90	UniRef90_UPI001EFA1AFA	NA	NA
UHGV-0045029_14	eggNOG-mapper	702459.BBPR_0899	NA	NA
UHGV-0045029_14	Pfam	PF09082	NA	DUF1922
UHGV-0045029_15	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0045029_15	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0045029_15	UniRef90	UniRef90_A0A0H3E9V3	YcfA family protein	NA
UHGV-0045029_15	eggNOG-mapper	398513.BBNG_00836	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0045029_15	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0045029_15	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0045029_15	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0045029_16	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0045029_16	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0045029_16	UniRef90	UniRef90_A0A0H3ECJ1	NA	NA
UHGV-0045029_16	eggNOG-mapper	398513.BBNG_00837	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0045029_16	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0045029_16	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0045029_16	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0045029_17	UniRef90	UniRef90_K2MFA2	Transcriptional regulator	NA
UHGV-0045029_17	COG	COG3636	NA	NA
UHGV-0045029_18	UniRef90	UniRef90_A0A292G7A2	Adhesin	NA
UHGV-0045029_18	eggNOG-mapper	1437608.BBIA_0377	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-0045029_18	COG	COG5434	Polygalacturonase	NA
UHGV-0045029_21	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045029_21	UniRef90	UniRef90_A0A0M4LJD5	G28 phagic protein	NA
UHGV-0045029_21	eggNOG-mapper	398513.BBNG_00210	Transcriptional regulator	NA
UHGV-0045029_21	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0045029_22	KOfam	K15013	ACSBG; long-chain-fatty-acid--CoA ligase ACSBG [EC:6.2.1.3]	NA
UHGV-0045029_22	UniRef90	UniRef90_UPI0012603B79	AMP-binding protein	NA
UHGV-0045029_22	eggNOG-mapper	398513.BBNG_00211	AMP-binding enzyme	NA
UHGV-0045029_22	COG	COG1022	Long-chain acyl-CoA synthetase (AMP-forming)	NA
UHGV-0045029_25	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045029_25	UniRef90	UniRef90_E4V9K2	HNH endonuclease domain protein	NA
UHGV-0045029_25	eggNOG-mapper	398513.BBNG_00842	NA	NA
UHGV-0045029_26	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0045029_26	UniRef90	UniRef90_E4V9K3	Prim-Pol domain-containing protein	NA
UHGV-0045029_26	eggNOG-mapper	702459.BBPR_0907	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0045029_26	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0045029_26	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0045029_26	Structural annotation	PF09250	NA	NA
UHGV-0045029_27	PHROG	phrog_1496	terminase small subunit	head and packaging
UHGV-0045029_27	UniRef90	UniRef90_A0A087DGP2	Gp25	NA
UHGV-0045029_27	eggNOG-mapper	398513.BBNG_00844	NA	NA
UHGV-0045029_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0045029_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045029_28	UniRef90	UniRef90_A0A2M9HT59	Terminase	NA
UHGV-0045029_28	eggNOG-mapper	702459.BBPR_0909	Terminase	NA
UHGV-0045029_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045029_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045029_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0045029_29	UniRef90	UniRef90_A0A0H3E9W1	Putative portal gp5	NA
UHGV-0045029_29	eggNOG-mapper	398513.BBNG_00846	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0045029_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0045029_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0045029_30	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0045029_30	UniRef90	UniRef90_A0A2N5IQ42	EndoU_bacteria domain-containing protein	NA
UHGV-0045029_30	eggNOG-mapper	702459.BBPR_0911	NA	NA
UHGV-0045029_31	eggNOG-mapper	398513.BBNG_00848	NA	NA
UHGV-0045029_32	PHROG	phrog_15003	head scaffolding protein	head and packaging
UHGV-0045029_32	eggNOG-mapper	702459.BBPR_0913	NA	NA
UHGV-0045029_32	Structural annotation	PF14265	NA	NA
UHGV-0045029_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045029_33	UniRef90	UniRef90_A0A6G0GG20	Major capsid subunit gp9	NA
UHGV-0045029_33	eggNOG-mapper	398513.BBNG_00849	Phage capsid family	NA
UHGV-0045029_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045029_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045029_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045029_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045029_34	UniRef90	UniRef90_UPI001F542DB7	head fiber protein	NA
UHGV-0045029_34	eggNOG-mapper	398513.BBNG_00850	NA	NA