UHGV-0045051

Genome information

Genome length 38,914 bps

CDS count 51

Completeness 97.41% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045051
vOTU ID	vOTU-071306
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_3764
BioSample	SAMEA728749
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.5
Jumbo phage	No

Genome content
Genome length	38,914 bps
GC content	39.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.12%
Average CDS length	681.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045051_1	UniRef90	UniRef90_A0A292RR16	Capsid protein (Fragment)	NA
UHGV-0045051_1	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0045051_1	COG	COG2369	NA	NA
UHGV-0045051_2	eggNOG-mapper	663278.Ethha_0092	NA	NA
UHGV-0045051_3	KOfam	K14059	int; integrase	NA
UHGV-0045051_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0045051_3	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0045051_3	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0045051_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045051_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0045051_3	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0045051_4	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0045051_5	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0045051_6	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0045051_6	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-0045051_6	Structural annotation	PF06114	NA	NA
UHGV-0045051_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0045051_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045051_7	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-0045051_7	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0045051_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045051_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045051_7	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0045051_7	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0045051_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0045051_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045051_8	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-0045051_8	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045051_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045051_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045051_10	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0045051_11	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0045051_11	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0045051_13	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0045051_13	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0045051_13	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0045051_13	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0045051_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0045051_14	PHROG	phrog_1499	NA	unknown function
UHGV-0045051_14	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0045051_14	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0045051_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-0045051_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0045051_14	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0045051_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045051_15	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-0045051_15	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0045051_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0045051_15	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0045051_16	PHROG	phrog_2698	NA	unknown function
UHGV-0045051_16	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0045051_16	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0045051_16	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0045051_17	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0045051_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0045051_17	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0045051_17	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0045051_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0045051_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0045051_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0045051_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0045051_17	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0045051_18	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0045051_18	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0045051_18	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0045051_18	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0045051_18	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0045051_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-0045051_18	COG	COG3598	RecA-family ATPase	NA
UHGV-0045051_18	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0045051_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0045051_19	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0045051_19	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0045051_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0045051_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0045051_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0045051_20	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0045051_21	Structural annotation	PF02796, NF008548	NA	NA
UHGV-0045051_25	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0045051_26	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0045051_26	Structural annotation	TIGR01636	NA	NA
UHGV-0045051_27	PHROG	phrog_3634	NA	unknown function
UHGV-0045051_27	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0045051_27	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0045051_27	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0045051_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0045051_28	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0045051_28	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0045051_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0045051_28	Structural annotation	PF07141	NA	NA
UHGV-0045051_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045051_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0045051_29	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0045051_29	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0045051_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0045051_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045051_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0045051_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0045051_30	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0045051_30	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0045051_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0045051_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0045051_31	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0045051_31	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0045051_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0045051_31	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0045051_31	COG	COG2369	NA	NA
UHGV-0045051_31	Structural annotation	PF06152, PF18825	NA	NA
UHGV-0045051_32	PHROG	phrog_918	NA	unknown function
UHGV-0045051_32	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0045051_32	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0045051_32	Pfam	PF19791	NA	DUF6275
UHGV-0045051_32	Structural annotation	PF19791	NA	NA
UHGV-0045051_33	PHROG	phrog_2616	NA	unknown function
UHGV-0045051_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0045051_34	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0045051_34	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0045051_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0045051_34	Structural annotation	PF06810	NA	NA
UHGV-0045051_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0045051_35	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0045051_35	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0045051_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0045051_36	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0045051_37	PHROG	phrog_3366	NA	unknown function
UHGV-0045051_37	Pfam	PF20536	NA	DUF6751
UHGV-0045051_37	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0045051_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0045051_38	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0045051_38	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0045051_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0045051_38	Structural annotation	PF11114	NA	NA
UHGV-0045051_39	PHROG	phrog_3266	tail completion	connector
UHGV-0045051_39	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0045051_39	Structural annotation	PF20765	NA	NA
UHGV-0045051_40	PHROG	phrog_3099	NA	unknown function
UHGV-0045051_40	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0045051_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0045051_41	PHROG	phrog_11299	NA	unknown function
UHGV-0045051_41	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0045051_41	Structural annotation	PF10666	NA	NA
UHGV-0045051_42	PHROG	phrog_706	NA	unknown function
UHGV-0045051_42	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0045051_42	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0045051_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0045051_42	Structural annotation	PF06854	NA	NA
UHGV-0045051_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0045051_44	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0045051_44	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0045051_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0045051_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0045051_45	PHROG	phrog_1194	NA	unknown function
UHGV-0045051_45	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0045051_45	Pfam	PF20458	NA	DUF6711
UHGV-0045051_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0045051_46	PHROG	phrog_18190	NA	unknown function
UHGV-0045051_46	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0045051_46	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0045051_46	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0045051_47	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0045051_47	Structural annotation	PF01664	NA	NA
UHGV-0045051_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0045051_49	PHROG	phrog_291	endolysin	lysis
UHGV-0045051_49	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0045051_49	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-0045051_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0045051_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0045051_49	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0045051_50	PHROG	phrog_199	holin	lysis
UHGV-0045051_50	UniRef90	UniRef90_UPI00164BD6C2	phage holin family protein	NA
UHGV-0045051_50	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0045051_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0045051_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0045051_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0045051_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0045051_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045051_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045051_51	UniRef90	UniRef90_A0A3C1CUP1	HTH cro/C1-type domain-containing protein	NA
UHGV-0045051_51	eggNOG-mapper	588581.Cpap_0877	helix-turn-helix	NA
UHGV-0045051_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045051_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045051_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA