UHGV-0045178

Genome information

vOTU vOTU-019129

Genome length 38,515 bps

CDS count 47

Completeness 86.39% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045178
vOTU ID	vOTU-019129
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_22943
BioSample	SAMEA2042509
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.21
Jumbo phage	No

Genome content
Genome length	38,515 bps
GC content	38.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.85%
Average CDS length	762.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045178_1	eggNOG-mapper	471875.RUMLAC_02045	NA	NA
UHGV-0045178_1	Structural annotation	PF13869, MF_00941, NF011963, COG1443	NA	NA
UHGV-0045178_2	PHROG	phrog_199	holin	lysis
UHGV-0045178_2	UniRef90	UniRef90_E0E214	Toxin secretion/phage lysis holin	NA
UHGV-0045178_2	eggNOG-mapper	1219626.HMPREF1639_07835	Toxin secretion phage lysis holin	NA
UHGV-0045178_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0045178_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0045178_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0045178_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0045178_3	UniRef90	UniRef90_R5JH72	Conserved domain protein	NA
UHGV-0045178_4	PHROG	phrog_33623	NA	unknown function
UHGV-0045178_5	PHROG	phrog_8309	NA	unknown function
UHGV-0045178_5	eggNOG-mapper	596315.HMPREF0634_0229	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0045178_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0045178_5	Structural annotation	PF17900	NA	NA
UHGV-0045178_6	PHROG	phrog_34633	NA	unknown function
UHGV-0045178_6	UniRef90	UniRef90_R5JH80	NA	NA
UHGV-0045178_6	eggNOG-mapper	1499683.CCFF01000017_gene2562	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0045178_6	Structural annotation	PF14545, PF18463, NF010435, COG5513	NA	NA
UHGV-0045178_7	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0045178_7	UniRef90	UniRef90_A0A1H8JYF0	Chaperone of endosialidase	NA
UHGV-0045178_7	eggNOG-mapper	1219626.HMPREF1639_07235	NA	NA
UHGV-0045178_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0045178_8	PHROG	phrog_1194	NA	unknown function
UHGV-0045178_8	UniRef90	UniRef90_A0A0P0N9J5	NA	NA
UHGV-0045178_8	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-0045178_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0045178_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0045178_9	UniRef90	UniRef90_A0A1H8JY90	Phage-related protein	NA
UHGV-0045178_9	eggNOG-mapper	1219626.HMPREF1639_07225	SLT domain	NA
UHGV-0045178_9	COG	COG1511	NA	NA
UHGV-0045178_9	Structural annotation	PF09325	NA	NA
UHGV-0045178_10	PHROG	phrog_8355	NA	unknown function
UHGV-0045178_10	UniRef90	UniRef90_A0A1H8JXL5	Bacteriophage Gp15 protein	NA
UHGV-0045178_10	eggNOG-mapper	1219626.HMPREF1639_07220	NA	NA
UHGV-0045178_11	PHROG	phrog_8300	NA	unknown function
UHGV-0045178_11	eggNOG-mapper	195103.CPF_0963	NA	NA
UHGV-0045178_12	PHROG	phrog_820	major tail protein	tail
UHGV-0045178_12	eggNOG-mapper	1219626.HMPREF1639_07210	domain, Protein	NA
UHGV-0045178_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0045178_12	COG	COG5492	NA	NA
UHGV-0045178_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0045178_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0045178_13	UniRef90	UniRef90_UPI001C10AADB	minor capsid protein	NA
UHGV-0045178_13	eggNOG-mapper	1219626.HMPREF1639_07205	NA	NA
UHGV-0045178_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0045178_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0045178_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0045178_14	UniRef90	UniRef90_UPI001C0FDF90	minor capsid protein	NA
UHGV-0045178_14	eggNOG-mapper	1219626.HMPREF1639_07200	Minor capsid protein	NA
UHGV-0045178_15	PHROG	phrog_8710	NA	unknown function
UHGV-0045178_15	eggNOG-mapper	1219626.HMPREF1639_07195	NA	NA
UHGV-0045178_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0045178_16	eggNOG-mapper	1219626.HMPREF1639_07190	NA	NA
UHGV-0045178_17	PHROG	phrog_1378	NA	unknown function
UHGV-0045178_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0045178_18	UniRef90	UniRef90_A0A095ZSI9	Capsid protein	NA
UHGV-0045178_18	eggNOG-mapper	1219626.HMPREF1639_07180	NA	NA
UHGV-0045178_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0045178_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0045178_19	UniRef90	UniRef90_A0A1H8L065	Phage minor structural protein GP20	NA
UHGV-0045178_19	eggNOG-mapper	1151292.QEW_2434	Phage minor structural protein GP20	NA
UHGV-0045178_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0045178_20	PHROG	phrog_3675	NA	unknown function
UHGV-0045178_20	UniRef90	UniRef90_D3MSU1	YjcQ protein	NA
UHGV-0045178_20	eggNOG-mapper	1035196.HMPREF9998_01953	YjcQ protein	NA
UHGV-0045178_20	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0045178_20	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0045178_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0045178_22	UniRef90	UniRef90_A0A1H8KFS8	Phage minor capsid protein 2	NA
UHGV-0045178_22	eggNOG-mapper	596329.HMPREF0631_0682	Bacterial toxin 50	NA
UHGV-0045178_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0045178_22	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0045178_22	COG	COG2369	NA	NA
UHGV-0045178_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0045178_23	UniRef90	UniRef90_UPI000AF926AF	capsid protein	NA
UHGV-0045178_23	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0045178_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0045178_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045178_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0045178_24	UniRef90	UniRef90_A0A1H8KG22	Phage terminase, large subunit, PBSX family	NA
UHGV-0045178_24	eggNOG-mapper	1219626.HMPREF1639_07150	Phage terminase, large subunit, PBSX family	NA
UHGV-0045178_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045178_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0045178_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045178_25	UniRef90	UniRef90_R5J7G4	Putative HNH endonuclease	NA
UHGV-0045178_25	eggNOG-mapper	1462526.BN990_03869	NUMOD4 motif	NA
UHGV-0045178_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0045178_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0045178_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0045178_25	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0045178_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0045178_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0045178_26	UniRef90	UniRef90_A0A095XP98	Terminase	NA
UHGV-0045178_26	eggNOG-mapper	1219626.HMPREF1639_07145	Terminase Small Subunit	NA
UHGV-0045178_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0045178_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0045178_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0045178_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045178_27	UniRef90	UniRef90_R5GVZ3	Sigma70_r4 domain-containing protein	NA
UHGV-0045178_27	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-0045178_27	Pfam	PF07374	NA	DUF1492
UHGV-0045178_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0045178_27	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-0045178_28	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0045178_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0045178_28	UniRef90	UniRef90_A0A095XNT2	DEAD/DEAH box helicase	NA
UHGV-0045178_28	eggNOG-mapper	1219626.HMPREF1639_07130	SNF2 family N-terminal domain	NA
UHGV-0045178_28	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0045178_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0045178_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0045178_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0045178_28	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0045178_29	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045178_29	UniRef90	UniRef90_R5J1V9	VRR-NUC domain protein	NA
UHGV-0045178_29	eggNOG-mapper	1000569.HMPREF1040_0204	VRR_NUC	NA
UHGV-0045178_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0045178_29	Structural annotation	PF08774, MF_01490	NA	NA
UHGV-0045178_30	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0045178_30	UniRef90	UniRef90_R5J2L1	Virulence-associated protein E	NA
UHGV-0045178_30	eggNOG-mapper	1219626.HMPREF1639_07120	Virulence-associated protein E	NA
UHGV-0045178_30	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0045178_30	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0045178_30	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0045178_31	PHROG	phrog_24248	NA	unknown function
UHGV-0045178_31	Structural annotation	PF10694	NA	NA
UHGV-0045178_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-0045178_32	UniRef90	UniRef90_UPI000E303E96	NA	NA
UHGV-0045178_32	eggNOG-mapper	1219626.HMPREF1639_07100	NA	NA
UHGV-0045178_32	Pfam	PF11753	NA	DUF3310
UHGV-0045178_35	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0045178_35	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0045178_35	UniRef90	UniRef90_R5JHU2	DNA-directed DNA polymerase domain protein	NA
UHGV-0045178_35	eggNOG-mapper	1219626.HMPREF1639_07095	DNA polymerase A domain	NA
UHGV-0045178_35	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0045178_35	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0045178_35	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0045178_37	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045178_37	UniRef90	UniRef90_UPI001D156B4E	NA	NA
UHGV-0045178_37	eggNOG-mapper	1219626.HMPREF1639_07085	NA	NA
UHGV-0045178_37	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0045178_37	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0045178_38	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045178_38	UniRef90	UniRef90_UPI001D158B4A	NA	NA
UHGV-0045178_38	eggNOG-mapper	1219626.HMPREF1639_07080	NA	NA
UHGV-0045178_38	Pfam	PF10926	NA	DUF2800
UHGV-0045178_38	COG	COG2887	RecB family exonuclease	NA
UHGV-0045178_38	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0045178_39	PHROG	phrog_22695	NA	unknown function
UHGV-0045178_39	UniRef90	UniRef90_F9MVA1	Conserved domain protein	NA
UHGV-0045178_39	eggNOG-mapper	879308.HMPREF9130_1214	NA	NA
UHGV-0045178_40	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-0045178_40	UniRef90	UniRef90_R5J767	Putative transcriptional regulator AsnC family	NA
UHGV-0045178_40	eggNOG-mapper	938278.CAJO01000051_gene817	DNA-binding transcription factor activity	NA
UHGV-0045178_40	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0045178_40	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0045178_40	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-0045178_44	UniRef90	UniRef90_R5J287	Conserved domain protein	NA
UHGV-0045178_44	eggNOG-mapper	596329.HMPREF0631_1345	NA	NA
UHGV-0045178_44	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0045178_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0045178_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0045178_45	UniRef90	UniRef90_D3MU38	DNA-binding helix-turn-helix protein	NA
UHGV-0045178_45	eggNOG-mapper	596329.HMPREF0631_1344	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0045178_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045178_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0045178_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0045178_45	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0045178_46	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0045178_46	PHROG	phrog_19856	NA	unknown function
UHGV-0045178_46	UniRef90	UniRef90_R5J1L2	Restriction endonuclease	NA
UHGV-0045178_46	eggNOG-mapper	1280692.AUJL01000027_gene2151	Restriction endonuclease	NA
UHGV-0045178_46	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0045178_46	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0045178_46	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0045178_46	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0045178_47	KOfam	K14059	int; integrase	NA
UHGV-0045178_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0045178_47	UniRef90	UniRef90_R5JI49	Integrase	NA
UHGV-0045178_47	eggNOG-mapper	1035196.HMPREF9998_01270	DNA integration	NA
UHGV-0045178_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0045178_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045178_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045178_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA