UHGV-0045280

Genome information

Genome length 40,761 bps

CDS count 73

Completeness 94.55% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045280
vOTU ID	vOTU-059982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3787
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.55% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.93
Jumbo phage	No

Genome content
Genome length	40,761 bps
GC content	52.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	89.47%
Average CDS length	504.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045280_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045280_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045280_2	UniRef90	UniRef90_A0A1C6J7L0	Helix-turn-helix	NA
UHGV-0045280_2	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0045280_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045280_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045280_2	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0045280_7	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0045280_7	PHROG	phrog_32437	NA	unknown function
UHGV-0045280_7	UniRef90	UniRef90_A0A1C6J857	Transglycosylase SLT domain	NA
UHGV-0045280_7	eggNOG-mapper	649639.Bcell_2896	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	NA
UHGV-0045280_7	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0045280_7	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0045280_7	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0045280_8	UniRef90	UniRef90_UPI001379F2B5	helix-turn-helix domain-containing protein	NA
UHGV-0045280_8	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0045280_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045280_8	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0045280_10	UniRef90	UniRef90_A0A1C6J873	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0045280_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045280_11	PHROG	phrog_1123	NA	unknown function
UHGV-0045280_11	UniRef90	UniRef90_A0A858BT04	DNA gyrase	NA
UHGV-0045280_11	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-0045280_11	Structural annotation	PF04703, MF_01804, TIGR00373, COG1695	NA	NA
UHGV-0045280_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045280_13	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0045280_13	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0045280_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0045280_13	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0045280_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0045280_14	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0045280_14	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0045280_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0045280_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045280_15	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0045280_15	Structural annotation	PF17375	NA	NA
UHGV-0045280_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0045280_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045280_16	UniRef90	UniRef90_A0A1C6J8D6	Single-stranded DNA-binding protein	NA
UHGV-0045280_16	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-0045280_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0045280_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0045280_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0045280_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0045280_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0045280_17	PHROG	phrog_15768	NA	unknown function
UHGV-0045280_17	UniRef90	UniRef90_A0A1C6J8D5	NA	NA
UHGV-0045280_17	Pfam	PF19808	NA	DUF6291
UHGV-0045280_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0045280_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045280_17	Structural annotation	PF19808	NA	NA
UHGV-0045280_18	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0045280_18	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0045280_18	eggNOG-mapper	768704.Desmer_4473	NA	NA
UHGV-0045280_18	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0045280_19	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045280_19	Structural annotation	PF20987	NA	NA
UHGV-0045280_21	PHROG	phrog_38832	NA	unknown function
UHGV-0045280_21	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0045280_23	PHROG	phrog_1934	NA	unknown function
UHGV-0045280_23	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0045280_23	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0045280_23	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0045280_24	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0045280_24	UniRef90	UniRef90_A0A1C6J908	NA	NA
UHGV-0045280_24	eggNOG-mapper	1100790.H2ELW3_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0045280_24	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0045280_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045280_25	UniRef90	UniRef90_UPI00145C0266	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0045280_25	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0045280_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0045280_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0045280_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0045280_26	PHROG	phrog_924	NA	unknown function
UHGV-0045280_26	UniRef90	UniRef90_UPI000952A8CA	NA	NA
UHGV-0045280_26	Pfam	PF04448	NA	DUF551
UHGV-0045280_26	Structural annotation	PF04448	NA	NA
UHGV-0045280_27	UniRef90	UniRef90_A0A1C6J8Z2	Helix-turn-helix	NA
UHGV-0045280_27	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045280_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045280_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045280_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0045280_31	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0045280_31	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0045280_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045280_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045280_31	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0045280_32	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0045280_32	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0045280_32	Structural annotation	PF13542	NA	NA
UHGV-0045280_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045280_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0045280_34	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0045280_34	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0045280_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0045280_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0045280_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045280_34	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0045280_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0045280_35	UniRef90	UniRef90_A0A1C6J9A8	Phage portal protein, putative, A118 family	NA
UHGV-0045280_35	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0045280_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0045280_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0045280_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0045280_36	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0045280_36	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0045280_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0045280_36	COG	COG2369	NA	NA
UHGV-0045280_36	Structural annotation	PF06152	NA	NA
UHGV-0045280_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0045280_37	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0045280_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045280_38	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0045280_38	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0045280_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045280_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045280_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045280_38	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045280_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0045280_39	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0045280_40	PHROG	phrog_3366	NA	unknown function
UHGV-0045280_40	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0045280_40	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0045280_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0045280_41	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0045280_41	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0045280_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0045280_41	Structural annotation	PF11114	NA	NA
UHGV-0045280_42	PHROG	phrog_3266	tail completion	connector
UHGV-0045280_42	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0045280_42	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0045280_42	Structural annotation	PF12691	NA	NA
UHGV-0045280_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0045280_43	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0045280_43	UniRef90	UniRef90_A0A1C6J9I6	Phage anti-repressor protein	NA
UHGV-0045280_43	eggNOG-mapper	1347392.CCEZ01000060_gene3263	AntA/AntB antirepressor	NA
UHGV-0045280_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0045280_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0045280_43	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0045280_44	PHROG	phrog_3099	NA	unknown function
UHGV-0045280_44	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0045280_44	Structural annotation	TIGR02126	NA	NA
UHGV-0045280_45	PHROG	phrog_11299	NA	unknown function
UHGV-0045280_45	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0045280_45	Structural annotation	PF10666	NA	NA
UHGV-0045280_46	PHROG	phrog_706	NA	unknown function
UHGV-0045280_46	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0045280_46	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0045280_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0045280_46	Structural annotation	PF06854	NA	NA
UHGV-0045280_47	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0045280_47	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0045280_47	UniRef90	UniRef90_A0A101WJ14	Antitoxin HicB	NA
UHGV-0045280_47	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0045280_47	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0045280_47	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0045280_47	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0045280_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0045280_48	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-0045280_48	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0045280_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0045280_49	PHROG	phrog_1194	NA	unknown function
UHGV-0045280_49	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0045280_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0045280_50	PHROG	phrog_32744	NA	unknown function
UHGV-0045280_50	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0045280_50	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0045280_51	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0045280_51	Structural annotation	PF03426, NF033675	NA	NA
UHGV-0045280_52	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0045280_53	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0045280_53	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0045280_53	UniRef90	UniRef90_A0A1C6JA86	Collagen triple helix repeat (20 copies)	NA
UHGV-0045280_53	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0045280_53	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0045280_53	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0045280_55	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0045280_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0045280_57	PHROG	phrog_18955	NA	unknown function
UHGV-0045280_57	UniRef90	UniRef90_A0A1C6JAB9	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045280_57	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0045280_57	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0045280_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0045280_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045280_57	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0045280_58	PHROG	phrog_1129	holin	lysis
UHGV-0045280_58	UniRef90	UniRef90_A0A3D4QXE9	Enolase	NA
UHGV-0045280_58	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0045280_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0045280_58	Structural annotation	PF06946	NA	NA
UHGV-0045280_59	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-0045280_60	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0045280_60	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0045280_62	PHROG	phrog_3754	NA	unknown function
UHGV-0045280_62	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0045280_63	PHROG	phrog_21718	NA	unknown function
UHGV-0045280_63	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0045280_64	PHROG	phrog_22984	NA	unknown function
UHGV-0045280_65	PHROG	phrog_16490	NA	unknown function
UHGV-0045280_65	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0045280_66	PHROG	phrog_20016	NA	unknown function
UHGV-0045280_66	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0045280_66	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0045280_66	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0045280_68	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0045280_72	PHROG	phrog_13999	NA	unknown function
UHGV-0045280_72	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0045280_73	eggNOG-mapper	742738.HMPREF9460_02835	NA	NA