UHGV-0045293

Genome information

Genome length 22,550 bps

CDS count 41

Completeness 51.47% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045293
vOTU ID	vOTU-026135
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_17417
BioSample	SAMEA2042918
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.23
Jumbo phage	No

Genome content
Genome length	22,550 bps
GC content	57.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.57%
Average CDS length	513.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045293_1	KOfam	K14059	int; integrase	NA
UHGV-0045293_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0045293_1	UniRef90	UniRef90_UPI001874116E	tyrosine-type recombinase/integrase	NA
UHGV-0045293_1	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0045293_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0045293_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045293_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045293_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0045293_2	PHROG	phrog_17658	NA	unknown function
UHGV-0045293_2	eggNOG-mapper	742738.HMPREF9460_02484	NA	NA
UHGV-0045293_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0045293_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0045293_3	UniRef90	UniRef90_UPI0013DDB973	XRE family transcriptional regulator	NA
UHGV-0045293_3	eggNOG-mapper	879308.HMPREF9130_0437	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0045293_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045293_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045293_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0045293_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0045293_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0045293_4	UniRef90	UniRef90_A0A396Q7L7	XRE family transcriptional regulator	NA
UHGV-0045293_4	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045293_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045293_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045293_8	UniRef90	UniRef90_A0A6G3M4P8	HTH cro/C1-type domain-containing protein	NA
UHGV-0045293_8	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0045293_9	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0045293_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0045293_13	PHROG	phrog_3657	NA	unknown function
UHGV-0045293_13	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-0045293_14	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045293_14	UniRef90	UniRef90_A0A1Y3RPZ6	NA	NA
UHGV-0045293_14	eggNOG-mapper	1567013.A0A0A7RVR3_9CAUD	NA	NA
UHGV-0045293_14	Pfam	PF12684	NA	DUF3799
UHGV-0045293_14	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0045293_15	PHROG	phrog_7566	NA	unknown function
UHGV-0045293_15	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0045293_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0045293_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045293_16	UniRef90	UniRef90_R6IDK3	Single-stranded DNA-binding protein	NA
UHGV-0045293_16	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0045293_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0045293_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0045293_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0045293_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0045293_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0045293_17	PHROG	phrog_16304	NA	unknown function
UHGV-0045293_17	UniRef90	UniRef90_A0A810QMI2	NA	NA
UHGV-0045293_17	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0045293_17	Pfam	PF19808	NA	DUF6291
UHGV-0045293_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0045293_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0045293_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045293_17	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0045293_18	PHROG	phrog_9804	NA	unknown function
UHGV-0045293_18	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0045293_18	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0045293_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0045293_18	Structural annotation	PF11417	NA	NA
UHGV-0045293_19	PHROG	phrog_30550	NA	unknown function
UHGV-0045293_19	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0045293_20	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0045293_20	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0045293_20	eggNOG-mapper	1195236.CTER_1773	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0045293_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0045293_21	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0045293_21	UniRef90	UniRef90_A0A371AZL8	DNA cytosine methyltransferase	NA
UHGV-0045293_21	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0045293_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0045293_23	UniRef90	UniRef90_UPI001D034588	Lar family restriction alleviation protein	NA
UHGV-0045293_23	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0045293_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0045293_25	eggNOG-mapper	742735.HMPREF9467_00919	NA	NA
UHGV-0045293_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045293_30	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0045293_30	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0045293_30	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0045293_31	PHROG	phrog_2412	NA	unknown function
UHGV-0045293_31	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0045293_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045293_32	PHROG	phrog_10250	NA	unknown function
UHGV-0045293_32	UniRef90	UniRef90_A0A096DBF3	PBSX family phage terminase, large subunit	NA
UHGV-0045293_32	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-0045293_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0045293_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0045293_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045293_32	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0045293_33	KOfam	K09961	NA	NA
UHGV-0045293_33	PHROG	phrog_146	portal protein	head and packaging
UHGV-0045293_33	UniRef90	UniRef90_U2DFW0	Phage-associated protein, HI1409 family	NA
UHGV-0045293_33	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0045293_33	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0045293_33	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0045293_33	COG	COG3567	NA	NA
UHGV-0045293_33	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0045293_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0045293_34	UniRef90	UniRef90_UPI001958AD70	minor capsid protein	NA
UHGV-0045293_34	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0045293_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0045293_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045293_34	Structural annotation	PF06152	NA	NA
UHGV-0045293_35	PHROG	phrog_29883	NA	unknown function
UHGV-0045293_36	KOfam	K09960	NA	NA
UHGV-0045293_36	PHROG	phrog_16985	NA	unknown function
UHGV-0045293_36	UniRef90	UniRef90_UPI00164BF670	NA	NA
UHGV-0045293_36	eggNOG-mapper	742738.HMPREF9460_02512	NA	NA
UHGV-0045293_36	Pfam	PF09979	NA	DUF2213
UHGV-0045293_36	COG	COG3566	NA	NA
UHGV-0045293_36	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0045293_37	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0045293_37	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0045293_37	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0045293_37	Structural annotation	PF09956	NA	NA
UHGV-0045293_38	PHROG	phrog_264	major head protein	head and packaging
UHGV-0045293_38	UniRef90	UniRef90_UPI00164AAF0B	NA	NA
UHGV-0045293_38	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0045293_38	Pfam	PF09950	NA	DUF2184
UHGV-0045293_38	COG	COG4834	NA	NA
UHGV-0045293_38	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0045293_39	PHROG	phrog_29824	NA	unknown function
UHGV-0045293_40	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0045293_40	UniRef90	UniRef90_UPI00164AB123	NA	NA
UHGV-0045293_40	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0045293_40	Pfam	PF13262	NA	DUF4054
UHGV-0045293_40	Structural annotation	PF13262	NA	NA