UHGV-0045303

Genome information

Genome length 31,791 bps

CDS count 44

Completeness 79.87% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045303
vOTU ID	vOTU-021322
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_23698
BioSample	SAMEA2042575
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.01
Jumbo phage	No

Genome content
Genome length	31,791 bps
GC content	42.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.15%
Average CDS length	691.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045303_1	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0045303_1	PHROG	phrog_10285	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0045303_1	UniRef90	UniRef90_R5BDE5	POLAc domain-containing protein	NA
UHGV-0045303_1	eggNOG-mapper	1235796.C815_00942	DNA polymerase	NA
UHGV-0045303_1	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0045303_1	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0045303_1	Structural annotation	PF00476, NF011540	NA	NA
UHGV-0045303_5	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0045303_5	UniRef90	UniRef90_UPI001D0A1C03	virulence-associated E family protein	NA
UHGV-0045303_5	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0045303_5	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0045303_5	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0045303_5	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0045303_6	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0045303_6	UniRef90	UniRef90_A0A413KAN3	MazG domain-containing protein	NA
UHGV-0045303_6	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0045303_8	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045303_8	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-0045303_8	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-0045303_8	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-0045303_9	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0045303_9	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0045303_9	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-0045303_9	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-0045303_9	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0045303_9	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0045303_9	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0045303_9	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0045303_9	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0045303_10	Structural annotation	TIGR01637	NA	NA
UHGV-0045303_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0045303_11	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0045303_11	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-0045303_11	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0045303_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0045303_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0045303_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0045303_11	COG	COG0863	DNA modification methylase	NA
UHGV-0045303_11	Structural annotation	PF02195, PF01555, MF_02015, MF_00786, NF010253, TIGR00180, COG1475, COG0863	NA	NA
UHGV-0045303_12	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0045303_12	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0045303_12	UniRef90	UniRef90_A0A7C6WAH1	Site-specific DNA-methyltransferase (Fragment)	NA
UHGV-0045303_12	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0045303_12	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0045303_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0045303_12	COG	COG0863	DNA modification methylase	NA
UHGV-0045303_12	Structural annotation	PF12847, TIGR02469	NA	NA
UHGV-0045303_13	PHROG	phrog_2412	NA	unknown function
UHGV-0045303_13	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0045303_13	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0045303_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045303_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0045303_14	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-0045303_14	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0045303_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0045303_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045303_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0045303_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0045303_15	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0045303_15	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0045303_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0045303_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0045303_16	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-0045303_16	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0045303_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0045303_16	COG	COG2369	NA	NA
UHGV-0045303_16	Structural annotation	PF06152	NA	NA
UHGV-0045303_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0045303_18	UniRef90	UniRef90_UPI001897D024	phage scaffolding protein	NA
UHGV-0045303_18	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0045303_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0045303_18	Structural annotation	PF06810	NA	NA
UHGV-0045303_19	PHROG	phrog_212	major head protein	head and packaging
UHGV-0045303_19	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-0045303_19	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0045303_19	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0045303_21	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-0045303_21	Structural annotation	PF20536	NA	NA
UHGV-0045303_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0045303_22	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-0045303_22	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0045303_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0045303_22	Structural annotation	PF11114	NA	NA
UHGV-0045303_23	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-0045303_23	Structural annotation	PF16807	NA	NA
UHGV-0045303_24	PHROG	phrog_3099	NA	unknown function
UHGV-0045303_24	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0045303_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0045303_25	Structural annotation	PF10666	NA	NA
UHGV-0045303_26	PHROG	phrog_706	NA	unknown function
UHGV-0045303_26	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-0045303_26	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0045303_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0045303_26	Structural annotation	PF06854	NA	NA
UHGV-0045303_27	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0045303_27	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-0045303_27	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0045303_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0045303_27	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0045303_27	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0045303_27	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0045303_28	PHROG	phrog_36410	NA	unknown function
UHGV-0045303_28	UniRef90	UniRef90_UPI001D0AA3C9	phage tail family protein	NA
UHGV-0045303_28	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0045303_28	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0045303_29	PHROG	phrog_538	minor tail protein	tail
UHGV-0045303_29	UniRef90	UniRef90_UPI001D0B76DC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0045303_29	eggNOG-mapper	428127.EUBDOL_01212	NA	NA
UHGV-0045303_29	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0045303_29	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0045303_30	PHROG	phrog_9534	head protein	head and packaging
UHGV-0045303_30	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0045303_31	Structural annotation	PF05895	NA	NA
UHGV-0045303_33	PHROG	phrog_1419	tail protein	tail
UHGV-0045303_34	PHROG	phrog_11037	NA	unknown function
UHGV-0045303_34	UniRef90	UniRef90_UPI001D0AE32A	SH3 domain-containing protein	NA
UHGV-0045303_34	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0045303_34	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0045303_34	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-0045303_36	PHROG	phrog_21718	NA	unknown function
UHGV-0045303_36	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0045303_36	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0045303_37	PHROG	phrog_22984	NA	unknown function
UHGV-0045303_38	PHROG	phrog_16490	NA	unknown function
UHGV-0045303_38	eggNOG-mapper	1235790.C805_00060	NA	NA
UHGV-0045303_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0045303_40	PHROG	phrog_443	holin	lysis
UHGV-0045303_40	UniRef90	UniRef90_UPI001896A9B9	holin	NA
UHGV-0045303_40	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-0045303_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0045303_40	Structural annotation	PF16945	NA	NA
UHGV-0045303_42	Structural annotation	PF19824, TIGR03090	NA	NA