UHGV-0045307

Genome information

Genome length 17,355 bps

CDS count 32

Completeness 53.90% (medium-quality)

geNomad score 0.9621

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045307
vOTU ID	vOTU-025750
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_23704
BioSample	SAMEA2042575
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9621
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.9
Jumbo phage	No

Genome content
Genome length	17,355 bps
GC content	56.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	88.41%
Average CDS length	483.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045307_2	KOfam	K07063	NA	NA
UHGV-0045307_2	UniRef90	UniRef90_A0A096KW94	PINc domain-containing protein	NA
UHGV-0045307_2	eggNOG-mapper	742722.HMPREF9463_00469	Toxic component of a toxin-antitoxin (TA) module. An RNase	NA
UHGV-0045307_2	Pfam	PF13470	PIN domain	PIN_3
UHGV-0045307_2	COG	COG1848	VapC family ribonuclease, toxin component of the VapBC toxin-antitoxin module, contains PIN domain	NA
UHGV-0045307_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0045307_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0045307_4	UniRef90	UniRef90_R7DAT4	Resolvase N-terminal domain protein	NA
UHGV-0045307_4	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0045307_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0045307_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0045307_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0045307_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0045307_4	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0045307_5	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0045307_5	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0045307_5	UniRef90	UniRef90_R7D9M3	Exonuclease domain-containing protein	NA
UHGV-0045307_5	eggNOG-mapper	428126.CLOSPI_00015	SWIM zinc finger	NA
UHGV-0045307_5	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0045307_5	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0045307_5	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0045307_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045307_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045307_6	UniRef90	UniRef90_R7D7E3	Putative DNA-binding phage protein	NA
UHGV-0045307_6	eggNOG-mapper	1238184.CM001792_gene658	Transcriptional	NA
UHGV-0045307_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045307_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045307_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045307_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045307_7	UniRef90	UniRef90_R7D821	Transcriptional regulator XRE family	NA
UHGV-0045307_7	eggNOG-mapper	411467.BACCAP_00776	Helix-turn-helix domain	NA
UHGV-0045307_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045307_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045307_10	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0045307_13	PHROG	phrog_24189	NA	unknown function
UHGV-0045307_13	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-0045307_13	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0045307_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0045307_13	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0045307_14	PHROG	phrog_24658	NA	unknown function
UHGV-0045307_14	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0045307_15	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0045307_15	UniRef90	UniRef90_UPI000550874E	NA	NA
UHGV-0045307_15	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0045307_15	Pfam	PF11753	NA	DUF3310
UHGV-0045307_18	KOfam	K14059	int; integrase	NA
UHGV-0045307_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0045307_18	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0045307_18	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0045307_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045307_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045307_18	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0045307_21	PHROG	phrog_21723	NA	unknown function
UHGV-0045307_21	UniRef90	UniRef90_A0A4R1AQA5	30S ribosomal protein S13	NA
UHGV-0045307_21	eggNOG-mapper	1033730.CAHG01000016_gene599	integration host factor	NA
UHGV-0045307_21	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0045307_21	COG	COG0099	Ribosomal protein S13	NA
UHGV-0045307_21	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0045307_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0045307_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045307_23	UniRef90	UniRef90_R7DAW4	Single-stranded DNA-binding protein	NA
UHGV-0045307_23	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0045307_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0045307_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0045307_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0045307_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0045307_23	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0045307_24	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0045307_25	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0045307_25	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0045307_25	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0045307_25	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0045307_25	Pfam	PF00692	dUTPase	dUTPase
UHGV-0045307_25	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0045307_25	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0045307_25	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0045307_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045307_26	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0045307_26	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0045307_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0045307_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045307_27	UniRef90	UniRef90_R7D851	HNH endonuclease domain protein	NA
UHGV-0045307_27	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0045307_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045307_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045307_28	PHROG	phrog_1066	NA	unknown function
UHGV-0045307_28	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0045307_28	Structural annotation	TIGR01558	NA	NA
UHGV-0045307_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045307_29	UniRef90	UniRef90_R7DAX5	Putative phage terminase large subunit	NA
UHGV-0045307_29	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0045307_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045307_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045307_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045307_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045307_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045307_30	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0045307_30	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0045307_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045307_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045307_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045307_31	KOfam	K06904	NA	NA
UHGV-0045307_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0045307_31	UniRef90	UniRef90_R7D7H1	Phage prohead protease HK97 family	NA
UHGV-0045307_31	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0045307_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0045307_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0045307_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0045307_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0045307_32	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0045307_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA