UHGV-0045335

Genome information

Genome length 42,201 bps

CDS count 71

Completeness 95.90% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045335
vOTU ID	vOTU-063749
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_16729
BioSample	SAMEA2042732
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.15
Jumbo phage	No

Genome content
Genome length	42,201 bps
GC content	28.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.24%
Average CDS length	546.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045335_1	eggNOG-mapper	428127.EUBDOL_01956	Putative peptidoglycan binding domain	NA
UHGV-0045335_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0045335_4	PHROG	phrog_9589	endolysin	lysis
UHGV-0045335_4	UniRef90	UniRef90_A0A416PBE7	CHAP domain-containing protein	NA
UHGV-0045335_4	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0045335_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0045335_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0045335_4	Structural annotation	PF01471, TIGR02594, NF038080, COG3409	NA	NA
UHGV-0045335_5	PHROG	phrog_1129	holin	lysis
UHGV-0045335_5	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0045335_5	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0045335_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0045335_5	Structural annotation	PF16079	NA	NA
UHGV-0045335_10	Structural annotation	PF14400	NA	NA
UHGV-0045335_11	PHROG	phrog_1220	head protein	head and packaging
UHGV-0045335_11	UniRef90	UniRef90_Q5L2K4	Phage-related protein	NA
UHGV-0045335_11	eggNOG-mapper	491915.Aflv_0675	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0045335_11	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0045335_11	Structural annotation	PF20747	NA	NA
UHGV-0045335_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0045335_12	UniRef90	UniRef90_UPI0006847BDA	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0045335_12	eggNOG-mapper	491915.Aflv_0677	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0045335_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0045335_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0045335_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0045335_13	UniRef90	UniRef90_A0A841TEX8	Phage tail family protein	NA
UHGV-0045335_13	eggNOG-mapper	491915.Aflv_0674	Phage tail protein	NA
UHGV-0045335_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0045335_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0045335_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0045335_13	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0045335_14	PHROG	phrog_7078	NA	unknown function
UHGV-0045335_14	UniRef90	UniRef90_UPI0006D82241	phage tail tape measure protein	NA
UHGV-0045335_14	eggNOG-mapper	743719.PaelaDRAFT_5670	phage tail tape measure protein	NA
UHGV-0045335_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0045335_16	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0045335_16	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0045335_16	UniRef90	UniRef90_A0A6B3ZYL6	Phage antirepressor Ant	NA
UHGV-0045335_16	eggNOG-mapper	1499683.CCFF01000017_gene2614	Phage antirepressor protein	NA
UHGV-0045335_16	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0045335_16	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0045335_16	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0045335_16	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0045335_19	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0045335_19	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0045335_19	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045335_19	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0045335_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045335_19	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0045335_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0045335_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045335_20	UniRef90	UniRef90_UPI0005C572E3	helix-turn-helix domain-containing protein	NA
UHGV-0045335_20	eggNOG-mapper	1280689.AUJC01000011_gene1494	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045335_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045335_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045335_20	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0045335_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045335_21	PHROG	phrog_17658	NA	unknown function
UHGV-0045335_21	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0045335_21	Structural annotation	PF17787, COG2469	NA	NA
UHGV-0045335_23	PHROG	phrog_88	major tail protein	tail
UHGV-0045335_23	UniRef90	UniRef90_A0A1M5Z118	Phage major tail protein, phi13 family	NA
UHGV-0045335_23	eggNOG-mapper	767817.Desgi_4418	NA	NA
UHGV-0045335_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0045335_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0045335_24	PHROG	phrog_78	tail terminator	connector
UHGV-0045335_24	eggNOG-mapper	1054460.SPPN_00200	NA	NA
UHGV-0045335_24	Structural annotation	PF05657	NA	NA
UHGV-0045335_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0045335_25	UniRef90	UniRef90_A0A4R7KUL9	HK97 gp10 family phage protein	NA
UHGV-0045335_25	eggNOG-mapper	936580.HMPREF1516_0714	NA	NA
UHGV-0045335_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0045335_25	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0045335_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0045335_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0045335_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0045335_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0045335_28	PHROG	phrog_247	major head protein	head and packaging
UHGV-0045335_28	UniRef90	UniRef90_A0A329UR19	Phage coat protein	NA
UHGV-0045335_28	eggNOG-mapper	742740.HMPREF9474_02353	NA	NA
UHGV-0045335_28	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0045335_28	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0045335_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0045335_29	UniRef90	UniRef90_UPI001788A7D1	phage scaffolding protein	NA
UHGV-0045335_29	eggNOG-mapper	1582149.A0A0A8WEG1_9CAUD	Phage minor structural protein GP20	NA
UHGV-0045335_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0045335_29	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0045335_30	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045335_30	UniRef90	UniRef90_A0A328L1C0	HNHc domain-containing protein	NA
UHGV-0045335_30	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0045335_30	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0045335_30	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0045335_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0045335_30	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0045335_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0045335_32	UniRef90	UniRef90_UPI0011783F58	minor capsid protein	NA
UHGV-0045335_32	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0045335_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0045335_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0045335_32	COG	COG2369	NA	NA
UHGV-0045335_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0045335_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0045335_33	UniRef90	UniRef90_A0A7X5D0E2	Phage portal protein	NA
UHGV-0045335_33	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0045335_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0045335_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0045335_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045335_34	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0045335_34	UniRef90	UniRef90_R7GTI0	Phage terminase large subunit PBSX family	NA
UHGV-0045335_34	eggNOG-mapper	1235796.C815_00926	phage terminase, large subunit	NA
UHGV-0045335_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0045335_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0045335_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0045335_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045335_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0045335_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0045335_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0045335_35	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0045335_35	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0045335_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0045335_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0045335_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0045335_37	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0045335_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045335_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0045335_39	Structural annotation	PF07374, MF_00674, TIGR02950, COG2739	NA	NA
UHGV-0045335_43	Structural annotation	PF09871, NF005100	NA	NA
UHGV-0045335_44	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0045335_44	UniRef90	UniRef90_A0A7Z0EIA5	Rhodanese-related sulfurtransferase	NA
UHGV-0045335_44	eggNOG-mapper	1120936.KB907208_gene1181	NA	NA
UHGV-0045335_44	Structural annotation	TIGR01689	NA	NA
UHGV-0045335_48	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-0045335_49	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0045335_49	eggNOG-mapper	1304880.JAGB01000002_gene2229	NA	NA
UHGV-0045335_49	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0045335_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0045335_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0045335_54	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0045335_54	eggNOG-mapper	411474.COPEUT_00923	Participates in initiation and elongation during chromosome replication	NA
UHGV-0045335_54	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0045335_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0045335_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-0045335_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0045335_55	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0045335_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045335_56	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0045335_56	UniRef90	UniRef90_A0A1G8FZR4	Helix-turn-helix domain-containing protein (Fragment)	NA
UHGV-0045335_56	eggNOG-mapper	1243664.CAVL020000020_gene3196	Replication initiation and membrane attachment	NA
UHGV-0045335_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045335_57	PHROG	phrog_7566	NA	unknown function
UHGV-0045335_57	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0045335_58	PHROG	phrog_1389	NA	unknown function
UHGV-0045335_58	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0045335_58	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0045335_59	PHROG	phrog_862	NA	unknown function
UHGV-0045335_59	eggNOG-mapper	1235835.C814_00380	NA	NA
UHGV-0045335_59	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0045335_61	Structural annotation	PF09943, COG3461	NA	NA
UHGV-0045335_65	Structural annotation	PF20385	NA	NA
UHGV-0045335_66	UniRef90	UniRef90_UPI001960594E	helix-turn-helix domain-containing protein	NA
UHGV-0045335_66	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045335_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045335_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045335_66	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045335_67	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0045335_67	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0045335_67	UniRef90	UniRef90_A0A417PKX0	XRE family transcriptional regulator	NA
UHGV-0045335_67	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0045335_67	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0045335_67	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0045335_67	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0045335_67	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0045335_68	COG	COG2374	Predicted extracellular nuclease	NA
UHGV-0045335_69	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0045335_69	PHROG	phrog_15286	NA	unknown function
UHGV-0045335_69	UniRef90	UniRef90_A0A351SRQ2	Phage antirepressor protein	NA
UHGV-0045335_69	eggNOG-mapper	525255.HMPREF0077_0944	BRO family, N-terminal domain	NA
UHGV-0045335_69	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0045335_69	COG	COG5380	Lipase chaperone LimK	NA
UHGV-0045335_69	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0045335_70	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0045335_70	PHROG	phrog_95	integrase	integration and excision
UHGV-0045335_70	UniRef90	UniRef90_K0AZJ4	Resolvase	NA
UHGV-0045335_70	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0045335_70	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0045335_70	Pfam	PF07508	Recombinase	Recombinase
UHGV-0045335_70	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0045335_70	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0045335_71	PHROG	phrog_2649	endolysin	lysis
UHGV-0045335_71	UniRef90	UniRef90_R7L458	PG_binding_1 domain-containing protein	NA
UHGV-0045335_71	eggNOG-mapper	908340.HMPREF9406_2173	peptidoglycan binding domain protein	NA
UHGV-0045335_71	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0045335_71	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA