UHGV-0045396

Genome information

Genome length 31,900 bps

CDS count 60

Completeness 90.01% (high-quality)

geNomad score 0.9386

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045396
vOTU ID	vOTU-059729
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_28975
BioSample	SAMEA2042832
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9386
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.69
Jumbo phage	No

Genome content
Genome length	31,900 bps
GC content	26.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.84%
Average CDS length	485.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045396_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0045396_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045396_1	UniRef90	UniRef90_UPI001C38E48B	helix-turn-helix domain-containing protein	NA
UHGV-0045396_1	eggNOG-mapper	1280689.AUJC01000011_gene1494	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045396_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045396_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045396_1	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0045396_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045396_5	PHROG	phrog_1123	NA	unknown function
UHGV-0045396_8	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0045396_8	UniRef90	UniRef90_A0A6B4SYD6	Phage_rep_org_N domain-containing protein	NA
UHGV-0045396_8	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0045396_8	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0045396_8	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0045396_8	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0045396_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0045396_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0045396_9	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-0045396_9	eggNOG-mapper	1174504.AJTN02000193_gene4149	Participates in initiation and elongation during chromosome replication	NA
UHGV-0045396_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0045396_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0045396_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0045396_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0045396_10	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0045396_10	PHROG	phrog_216	integrase	integration and excision
UHGV-0045396_10	UniRef90	UniRef90_A0A1S1V410	Tyrosine recombinase XerD	NA
UHGV-0045396_10	eggNOG-mapper	500633.CLOHIR_00361	Site-specific recombinase, phage integrase family	NA
UHGV-0045396_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045396_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045396_10	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0045396_12	PHROG	phrog_19831	NA	unknown function
UHGV-0045396_23	PHROG	phrog_20735	NA	unknown function
UHGV-0045396_23	UniRef90	UniRef90_R6VAD9	RNA_ligase domain-containing protein	NA
UHGV-0045396_23	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0045396_23	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-0045396_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045396_25	UniRef90	UniRef90_A0A7Z0PK87	Transcriptional regulator	NA
UHGV-0045396_25	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0045396_25	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-0045396_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045396_28	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-0045396_28	eggNOG-mapper	471855.Shel_08210	endonuclease activity	NA
UHGV-0045396_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045396_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045396_28	Structural annotation	NF008448	NA	NA
UHGV-0045396_30	PHROG	phrog_1066	NA	unknown function
UHGV-0045396_30	eggNOG-mapper	641107.CDLVIII_1334	NA	NA
UHGV-0045396_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0045396_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045396_31	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0045396_31	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0045396_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045396_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045396_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045396_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045396_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045396_32	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-0045396_32	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0045396_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045396_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045396_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045396_33	KOfam	K06904	NA	NA
UHGV-0045396_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0045396_33	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0045396_33	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0045396_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0045396_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0045396_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0045396_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0045396_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045396_34	UniRef90	UniRef90_A0A1W2AS24	Phage major capsid protein, HK97 family	NA
UHGV-0045396_34	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0045396_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045396_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045396_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045396_35	PHROG	phrog_5223	neck protein	connector
UHGV-0045396_35	UniRef90	UniRef90_A0A8J7KDM6	DNA-packaging protein	NA
UHGV-0045396_35	eggNOG-mapper	1444306.JFZC01000018_gene2199	NA	NA
UHGV-0045396_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0045396_36	UniRef90	UniRef90_A0A559U355	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0045396_36	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0045396_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0045396_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0045396_37	UniRef90	UniRef90_UPI001939C793	HK97 gp10 family phage protein	NA
UHGV-0045396_37	eggNOG-mapper	698758.AXY_02170	NA	NA
UHGV-0045396_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0045396_38	UniRef90	UniRef90_A0A0Z8KW16	Prophage pi2 protein 38	NA
UHGV-0045396_38	eggNOG-mapper	938289.CAJN020000007_gene300	NA	NA
UHGV-0045396_38	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0045396_39	PHROG	phrog_88	major tail protein	tail
UHGV-0045396_39	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-0045396_39	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0045396_39	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0045396_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0045396_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0045396_40	PHROG	phrog_709	NA	unknown function
UHGV-0045396_40	Structural annotation	PF11836	NA	NA
UHGV-0045396_42	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0045396_42	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0045396_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0045396_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0045396_44	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0045396_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0045396_44	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0045396_45	PHROG	phrog_7064	tail protein	tail
UHGV-0045396_45	UniRef90	UniRef90_R6DQ52	Putative phage protein	NA
UHGV-0045396_45	eggNOG-mapper	1139219.I569_00096	NA	NA
UHGV-0045396_45	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0045396_46	Structural annotation	PF20747	NA	NA
UHGV-0045396_47	PHROG	phrog_372	tail protein	tail
UHGV-0045396_47	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0045396_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0045396_47	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0045396_48	KOfam	K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	NA
UHGV-0045396_48	PHROG	phrog_22899	NA	unknown function
UHGV-0045396_48	Pfam	PF03382	NA	DUF285
UHGV-0045396_48	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0045396_48	Structural annotation	PF03382	NA	NA
UHGV-0045396_53	PHROG	phrog_13256	NA	unknown function
UHGV-0045396_53	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0045396_55	PHROG	phrog_1309	endolysin	lysis
UHGV-0045396_55	UniRef90	UniRef90_UPI0004000319	SH3 domain-containing protein	NA
UHGV-0045396_55	eggNOG-mapper	1123309.AQYB01000028_gene684	Sh3 type 3 domain protein	NA
UHGV-0045396_55	Pfam	PF05257	CHAP domain	CHAP
UHGV-0045396_55	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0045396_55	COG	COG3103	NA	NA
UHGV-0045396_55	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-0045396_56	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0045396_57	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045396_57	UniRef90	UniRef90_A0A133N274	AP2 domain protein	NA
UHGV-0045396_57	eggNOG-mapper	330399.A8ATW6_9CAUD	HNH endonuclease	NA
UHGV-0045396_58	UniRef90	UniRef90_UPI00067BC42D	helix-turn-helix transcriptional regulator	NA