UHGV-0045405

Genome information

Genome length 33,786 bps

CDS count 56

Completeness 95.92% (high-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045405
vOTU ID	vOTU-068597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_14934
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.58
Jumbo phage	No

Genome content
Genome length	33,786 bps
GC content	27.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.70%
Average CDS length	549.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045405_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0045405_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0045405_1	UniRef90	UniRef90_A0A2C6CCM4	Integrase	NA
UHGV-0045405_1	eggNOG-mapper	457405.FSDG_02410	Phage integrase family	NA
UHGV-0045405_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045405_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0045405_1	Structural annotation	PF00589, PF13495, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0045405_2	UniRef90	UniRef90_UPI000E1BD0D1	pyocin knob domain-containing protein	NA
UHGV-0045405_4	eggNOG-mapper	393480.FNP_1705	NA	NA
UHGV-0045405_5	PHROG	phrog_23632	NA	unknown function
UHGV-0045405_5	eggNOG-mapper	457405.FSDG_01604	NA	NA
UHGV-0045405_7	PHROG	phrog_19961	tail fiber protein	tail
UHGV-0045405_7	UniRef90	UniRef90_UPI001F22B969	ribose-phosphate pyrophosphokinase	NA
UHGV-0045405_7	eggNOG-mapper	457405.FSDG_01284	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0045405_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0045405_8	PHROG	phrog_521	tail protein	tail
UHGV-0045405_8	UniRef90	UniRef90_A0A2P1RZD7	NA	NA
UHGV-0045405_8	eggNOG-mapper	393480.FNP_1704	NA	NA
UHGV-0045405_8	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0045405_8	COG	COG3778	NA	NA
UHGV-0045405_8	Structural annotation	PF10076, TIGR01634, COG3778	NA	NA
UHGV-0045405_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0045405_9	UniRef90	UniRef90_F7KZD8	PBSX prophage	NA
UHGV-0045405_9	eggNOG-mapper	393480.FNP_1703	Baseplate J-like protein	NA
UHGV-0045405_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0045405_9	COG	COG3299	NA	NA
UHGV-0045405_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0045405_10	PHROG	phrog_120	baseplate protein	tail
UHGV-0045405_10	UniRef90	UniRef90_UPI000787AD40	NA	NA
UHGV-0045405_10	eggNOG-mapper	393480.FNP_1702	NA	NA
UHGV-0045405_10	Pfam	PF10934	NA	DUF2634
UHGV-0045405_10	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0045405_11	PHROG	phrog_579	NA	unknown function
UHGV-0045405_11	UniRef90	UniRef90_UPI001237BBFB	NA	NA
UHGV-0045405_11	eggNOG-mapper	393480.FNP_1701	NA	NA
UHGV-0045405_11	Pfam	PF10844	NA	DUF2577
UHGV-0045405_11	Structural annotation	PF10844, MF_00216	NA	NA
UHGV-0045405_12	PHROG	phrog_400	tail protein	tail
UHGV-0045405_12	UniRef90	UniRef90_A0A162J0F6	Terminase	NA
UHGV-0045405_12	eggNOG-mapper	1095747.HMPREF1049_1997	Late control gene D protein	NA
UHGV-0045405_12	COG	COG3500	NA	NA
UHGV-0045405_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0045405_13	PHROG	phrog_5184	NA	unknown function
UHGV-0045405_13	UniRef90	UniRef90_UPI001D0A3BE0	phage portal protein	NA
UHGV-0045405_13	eggNOG-mapper	393480.FNP_1699	NA	NA
UHGV-0045405_13	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0045405_14	PHROG	phrog_7972	NA	unknown function
UHGV-0045405_14	UniRef90	UniRef90_A0A2B7YMQ7	Phage tail protein	NA
UHGV-0045405_14	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-0045405_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0045405_14	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0045405_15	eggNOG-mapper	393480.FNP_1696	NA	NA
UHGV-0045405_16	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0045405_16	UniRef90	UniRef90_A0A162J0C0	Phage portal protein	NA
UHGV-0045405_16	eggNOG-mapper	393480.FNP_1695	NA	NA
UHGV-0045405_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0045405_16	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0045405_17	PHROG	phrog_365	tail protein	tail
UHGV-0045405_17	UniRef90	UniRef90_A0A2B7YNL1	Phage tail tube protein	NA
UHGV-0045405_17	eggNOG-mapper	393480.FNP_1694	Phage tail tube protein	NA
UHGV-0045405_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0045405_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0045405_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0045405_18	UniRef90	UniRef90_F7KZE6	Phage_sheath_1C domain-containing protein	NA
UHGV-0045405_18	eggNOG-mapper	393480.FNP_1693	Phage tail sheath C-terminal domain	NA
UHGV-0045405_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0045405_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0045405_19	PHROG	phrog_525	NA	unknown function
UHGV-0045405_19	eggNOG-mapper	393480.FNP_1692	NA	NA
UHGV-0045405_19	Pfam	PF20765	NA	DUF6838
UHGV-0045405_19	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0045405_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0045405_20	UniRef90	UniRef90_F7KZE8	Phage protein, HK97 gp10 family	NA
UHGV-0045405_20	eggNOG-mapper	469617.FUAG_00840	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0045405_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0045405_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0045405_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0045405_21	UniRef90	UniRef90_F7KZE9	Putative phage head-tail adaptor	NA
UHGV-0045405_21	eggNOG-mapper	393480.FNP_1690	Phage head-tail joining protein	NA
UHGV-0045405_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0045405_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0045405_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0045405_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0045405_22	UniRef90	UniRef90_R5X4S0	Putative DNA packaging protein	NA
UHGV-0045405_22	eggNOG-mapper	393480.FNP_1689	Phage gp6-like head-tail connector protein	NA
UHGV-0045405_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0045405_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0045405_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0045405_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045405_23	UniRef90	UniRef90_A0A2B7YPJ9	Phage major capsid protein	NA
UHGV-0045405_23	eggNOG-mapper	469617.FUAG_00837	Phage capsid family	NA
UHGV-0045405_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045405_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045405_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045405_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045405_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0045405_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0045405_24	UniRef90	UniRef90_F7KZF2	ClpP protease family protein	NA
UHGV-0045405_24	eggNOG-mapper	469617.FUAG_00836	Serine dehydrogenase proteinase	NA
UHGV-0045405_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0045405_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0045405_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0045405_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045405_25	UniRef90	UniRef90_A0A2B7YMP8	Phage portal protein	NA
UHGV-0045405_25	eggNOG-mapper	393480.FNP_1686	Phage portal protein	NA
UHGV-0045405_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045405_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0045405_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045405_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045405_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045405_26	UniRef90	UniRef90_F7KZF4	Putative phage terminase, large subunit	NA
UHGV-0045405_26	eggNOG-mapper	1095747.HMPREF1049_2013	Phage Terminase	NA
UHGV-0045405_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045405_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045405_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045405_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0045405_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0045405_27	UniRef90	UniRef90_F7KZF5	Phage terminase, small subunit, P27 family	NA
UHGV-0045405_27	eggNOG-mapper	393480.FNP_1684	Phage terminase, small subunit	NA
UHGV-0045405_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0045405_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0045405_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0045405_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0045405_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045405_28	UniRef90	UniRef90_A0A2C6BQA4	Endonuclease	NA
UHGV-0045405_28	eggNOG-mapper	469617.FUAG_00832	NA	NA
UHGV-0045405_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045405_30	UniRef90	UniRef90_A0A223AX34	Sigma70_r4_2 domain-containing protein	NA
UHGV-0045405_30	eggNOG-mapper	1095747.HMPREF1049_1839	NA	NA
UHGV-0045405_30	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0045405_30	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0045405_31	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-0045405_31	UniRef90	UniRef90_R5WXU5	Methylase_S domain-containing protein	NA
UHGV-0045405_31	eggNOG-mapper	1095738.HMPREF1047_1256	COG0732 Restriction endonuclease S subunits	NA
UHGV-0045405_31	PADLOC	Specificity_I_00006	Type I specificity subunit	RM
UHGV-0045405_31	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0045405_31	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-0045405_32	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0045405_32	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0045405_32	UniRef90	UniRef90_R5X4Q8	N6_Mtase domain-containing protein	NA
UHGV-0045405_32	eggNOG-mapper	546275.FUSPEROL_02036	NA	NA
UHGV-0045405_32	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0045405_32	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0045405_33	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0045405_33	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0045405_33	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0045405_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0045405_36	PHROG	phrog_10105	NA	unknown function
UHGV-0045405_36	UniRef90	UniRef90_R5WXT8	NA	NA
UHGV-0045405_36	eggNOG-mapper	469660.A8HP63_9CAUD	NA	NA
UHGV-0045405_36	Pfam	PF20081	NA	DUF6475
UHGV-0045405_36	Structural annotation	PF20081	NA	NA
UHGV-0045405_37	PHROG	phrog_25527	NA	unknown function
UHGV-0045405_37	UniRef90	UniRef90_UPI00049641C9	helix-turn-helix domain-containing protein	NA
UHGV-0045405_37	eggNOG-mapper	1316932.MHH_c25600	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0045405_37	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0045405_37	Structural annotation	PF09524, PF01638, TIGR02220, NF040642, COG5625	NA	NA
UHGV-0045405_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0045405_38	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0045405_38	UniRef90	UniRef90_A0A8G0JZC1	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0045405_38	eggNOG-mapper	536232.CLM_2573	Phage antirepressor protein	NA
UHGV-0045405_38	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0045405_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0045405_38	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0045405_38	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0045405_40	PHROG	phrog_30613	NA	unknown function
UHGV-0045405_40	UniRef90	UniRef90_A0A223AXD6	Peptidylprolyl isomerase	NA
UHGV-0045405_44	PHROG	phrog_31744	NA	unknown function
UHGV-0045405_47	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045405_47	UniRef90	UniRef90_UPI001959B198	NA	NA
UHGV-0045405_47	eggNOG-mapper	420246.GTNG_2077	NA	NA
UHGV-0045405_47	Structural annotation	COG2250	NA	NA
UHGV-0045405_49	UniRef90	UniRef90_A0A2C6BK51	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0045405_49	eggNOG-mapper	526218.Sterm_3925	NA	NA
UHGV-0045405_49	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0045405_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045405_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045405_50	UniRef90	UniRef90_D6LEM0	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0045405_50	eggNOG-mapper	546275.FUSPEROL_02065	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045405_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045405_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045405_50	Structural annotation	PF01381, MF_02017, NF007257, COG1396	NA	NA
UHGV-0045405_51	PHROG	phrog_87	metallo-protease	other
UHGV-0045405_51	UniRef90	UniRef90_F7L1A4	Peptidase_M78 domain-containing protein	NA
UHGV-0045405_51	eggNOG-mapper	1280692.AUJL01000009_gene2969	IrrE N-terminal-like domain	NA
UHGV-0045405_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0045405_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0045405_52	PHROG	phrog_6600	NA	unknown function
UHGV-0045405_52	UniRef90	UniRef90_R5WXR8	HIRAN domain-containing protein	NA
UHGV-0045405_52	eggNOG-mapper	396513.SCA_0783	HIRAN domain	NA
UHGV-0045405_52	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0045405_53	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0045405_53	UniRef90	UniRef90_A0A8G0JWB6	Ltp family lipoprotein	NA
UHGV-0045405_53	eggNOG-mapper	1292035.H476_1527	Host cell surface-exposed lipoprotein	NA
UHGV-0045405_53	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0045405_53	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0045405_53	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0045405_54	KOfam	K14059	int; integrase	NA
UHGV-0045405_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0045405_54	UniRef90	UniRef90_D4CXA6	Site-specific recombinase, phage integrase family	NA
UHGV-0045405_54	eggNOG-mapper	546275.FUSPEROL_02067	Belongs to the 'phage' integrase family	NA
UHGV-0045405_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0045405_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045405_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045405_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0045405_55	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0045405_55	PHROG	phrog_2737	NA	unknown function
UHGV-0045405_55	UniRef90	UniRef90_D4CX36	Addiction module antitoxin, RelB/DinJ family	NA
UHGV-0045405_55	eggNOG-mapper	1216362.B437_06812	RelB antitoxin	NA
UHGV-0045405_55	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0045405_55	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0045405_55	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0045405_56	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0045405_56	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0045405_56	UniRef90	UniRef90_Q7P391	Putative mRNA interferase YoeB	NA
UHGV-0045405_56	eggNOG-mapper	546275.FUSPEROL_01995	addiction module toxin, Txe YoeB family	NA
UHGV-0045405_56	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0045405_56	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0045405_56	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0045405_56	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA