UHGV-0045432

Genome information

vOTU vOTU-020422

Genome length 35,684 bps

CDS count 59

Completeness 85.48% (medium-quality)

geNomad score 0.9638

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045432
vOTU ID	vOTU-020422
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4223
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9638
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.75
Jumbo phage	No

Genome content
Genome length	35,684 bps
GC content	34.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	86.23%
Average CDS length	526.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045432_1	KOfam	K14059	int; integrase	NA
UHGV-0045432_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0045432_1	UniRef90	UniRef90_A0A844JMV6	Tyrosine-type recombinase/integrase	NA
UHGV-0045432_1	eggNOG-mapper	702450.CUW_0508	Phage integrase family	NA
UHGV-0045432_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0045432_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0045432_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045432_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045432_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0045432_2	PHROG	phrog_87	metallo-protease	other
UHGV-0045432_2	UniRef90	UniRef90_A0A7X3D495	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0045432_2	eggNOG-mapper	1449338.JQLU01000005_gene3731	Zn peptidase	NA
UHGV-0045432_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0045432_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0045432_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045432_3	UniRef90	UniRef90_UPI0018A99F5F	helix-turn-helix domain-containing protein	NA
UHGV-0045432_3	eggNOG-mapper	985762.SAGN_05900	Peptidase S24-like	NA
UHGV-0045432_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045432_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0045432_4	UniRef90	UniRef90_A0A844JJV8	Helix-turn-helix domain-containing protein	NA
UHGV-0045432_4	eggNOG-mapper	387344.LVIS_1596	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045432_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045432_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045432_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0045432_5	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0045432_5	UniRef90	UniRef90_UPI0006C1AD47	ORF6C domain-containing protein	NA
UHGV-0045432_5	eggNOG-mapper	1497679.EP56_15170	ORF6N domain	NA
UHGV-0045432_5	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0045432_5	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0045432_5	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0045432_5	Structural annotation	PF10552, PF10547, COG3617	NA	NA
UHGV-0045432_6	UniRef90	UniRef90_A0A844JKU0	Helix-turn-helix domain-containing protein	NA
UHGV-0045432_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0045432_8	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045432_8	UniRef90	UniRef90_UPI001459F8D7	NA	NA
UHGV-0045432_8	eggNOG-mapper	525255.HMPREF0077_0960	NA	NA
UHGV-0045432_8	Structural annotation	COG2250	NA	NA
UHGV-0045432_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0045432_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0045432_9	UniRef90	UniRef90_A0A844JSP3	Helix-turn-helix domain-containing protein	NA
UHGV-0045432_9	eggNOG-mapper	315749.Bcer98_2579	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0045432_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045432_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045432_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0045432_11	PHROG	phrog_3882	NA	unknown function
UHGV-0045432_15	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0045432_15	UniRef90	UniRef90_UPI0012BCA066	replication protein	NA
UHGV-0045432_15	eggNOG-mapper	315730.BcerKBAB4_3612	dnaD_dom DnaD domain protein	NA
UHGV-0045432_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045432_15	Structural annotation	PF04492, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0045432_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0045432_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045432_16	UniRef90	UniRef90_A0A6A8SJ61	IstB_IS21 domain-containing protein	NA
UHGV-0045432_16	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0045432_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0045432_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0045432_16	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0045432_17	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0045432_17	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0045432_17	UniRef90	UniRef90_A0A6G2CEM3	AbrB family transcriptional regulator	NA
UHGV-0045432_17	eggNOG-mapper	702450.CUW_0519	toxin-antitoxin pair type II binding	NA
UHGV-0045432_17	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0045432_17	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0045432_21	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045432_21	eggNOG-mapper	1150474.JQJI01000011_gene55	YqaJ viral recombinase family	NA
UHGV-0045432_21	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0045432_22	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045432_22	UniRef90	UniRef90_A0A844JU97	NA	NA
UHGV-0045432_22	eggNOG-mapper	702450.CUW_0524	NA	NA
UHGV-0045432_22	Pfam	PF06378	NA	DUF1071
UHGV-0045432_22	Structural annotation	PF06378, TIGR00607, COG4712	NA	NA
UHGV-0045432_23	PHROG	phrog_398	NA	unknown function
UHGV-0045432_23	UniRef90	UniRef90_UPI0006C0DACF	putative HNHc nuclease	NA
UHGV-0045432_23	eggNOG-mapper	702450.CUW_0525	Putative HNHc nuclease	NA
UHGV-0045432_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0045432_23	Structural annotation	PF16784	NA	NA
UHGV-0045432_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0045432_26	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0045432_26	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0045432_26	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0045432_27	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0045432_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0045432_28	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0045432_28	UniRef90	UniRef90_A0A174PE70	HNHc domain-containing protein	NA
UHGV-0045432_28	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0045432_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045432_28	Pfam	PF13671	AAA domain	AAA_33
UHGV-0045432_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045432_28	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0045432_29	PHROG	phrog_1066	NA	unknown function
UHGV-0045432_29	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0045432_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0045432_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045432_30	UniRef90	UniRef90_A0A174PIP2	Phage terminase-like protein, large subunit	NA
UHGV-0045432_30	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0045432_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045432_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045432_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045432_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045432_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045432_31	UniRef90	UniRef90_A0A174PI69	Phage portal protein, HK97 family	NA
UHGV-0045432_31	eggNOG-mapper	1414720.CBYM010000040_gene1645	Portal protein	NA
UHGV-0045432_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045432_31	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0045432_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045432_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0045432_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0045432_32	UniRef90	UniRef90_A0A316P3G8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0045432_32	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0045432_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0045432_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0045432_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0045432_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045432_33	UniRef90	UniRef90_A0A174PEL0	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045432_33	eggNOG-mapper	1382358.JHVN01000024_gene1707	Phage capsid family	NA
UHGV-0045432_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045432_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045432_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045432_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045432_35	PHROG	phrog_5223	neck protein	connector
UHGV-0045432_35	UniRef90	UniRef90_UPI0017869A34	head-tail connector protein	NA
UHGV-0045432_35	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0045432_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0045432_35	Structural annotation	TIGR01560	NA	NA
UHGV-0045432_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0045432_36	UniRef90	UniRef90_A0A133N6L3	Putative phage head-tail adaptor	NA
UHGV-0045432_36	eggNOG-mapper	931626.Awo_c35070	NA	NA
UHGV-0045432_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0045432_37	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-0045432_37	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0045432_37	Structural annotation	TIGR01725	NA	NA
UHGV-0045432_38	PHROG	phrog_957	head protein	head and packaging
UHGV-0045432_38	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-0045432_38	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0045432_38	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0045432_39	PHROG	phrog_885	major tail protein	tail
UHGV-0045432_39	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0045432_39	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0045432_40	eggNOG-mapper	1414720.CBYM010000040_gene1653	NA	NA
UHGV-0045432_41	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-0045432_42	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0045432_42	UniRef90	UniRef90_A0A174PJV4	Phage-related minor tail protein	NA
UHGV-0045432_42	eggNOG-mapper	1499683.CCFF01000005_gene78	phage tail tape measure protein	NA
UHGV-0045432_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0045432_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0045432_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0045432_42	Structural annotation	PF06791, COG3941	NA	NA
UHGV-0045432_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0045432_43	UniRef90	UniRef90_A0A845QU54	Phage tail protein	NA
UHGV-0045432_43	eggNOG-mapper	1408424.JHYI01000032_gene3812	tail component	NA
UHGV-0045432_43	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0045432_43	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0045432_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0045432_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0045432_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0045432_44	UniRef90	UniRef90_UPI000CCC72B3	phage tail protein	NA
UHGV-0045432_44	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0045432_44	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0045432_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0045432_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0045432_44	COG	COG4926	Phage-related protein	NA
UHGV-0045432_44	Structural annotation	PF14594, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0045432_45	PHROG	phrog_6130	NA	unknown function
UHGV-0045432_45	eggNOG-mapper	1347392.CCEZ01000005_gene1247	NA	NA
UHGV-0045432_46	PHROG	phrog_16573	NA	unknown function
UHGV-0045432_46	UniRef90	UniRef90_A0A6A8SHN8	NA	NA
UHGV-0045432_46	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0045432_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0045432_46	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0045432_48	eggNOG-mapper	1280689.AUJC01000007_gene3301	NA	NA
UHGV-0045432_49	PHROG	phrog_1129	holin	lysis
UHGV-0045432_49	UniRef90	UniRef90_UPI0006C41F72	phage holin family protein	NA
UHGV-0045432_49	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0045432_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0045432_49	Structural annotation	PF06946	NA	NA
UHGV-0045432_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0045432_50	PHROG	phrog_3088	amidase	lysis
UHGV-0045432_50	UniRef90	UniRef90_A0A6G2CIG0	SPOR domain-containing protein	NA
UHGV-0045432_50	eggNOG-mapper	702450.CUW_0552	Ami_2	NA
UHGV-0045432_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0045432_50	Pfam	PF05036	SPOR domain	SPOR
UHGV-0045432_50	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0045432_50	Structural annotation	PF01510, PF08460, MF_04111, NF008758, COG5632	NA	NA
UHGV-0045432_51	eggNOG-mapper	913865.DOT_3035	NA	NA
UHGV-0045432_51	Structural annotation	PF20505, NF001460, COG2974	NA	NA
UHGV-0045432_52	eggNOG-mapper	913865.DOT_3034	NA	NA
UHGV-0045432_52	Structural annotation	PF19363, COG3355	NA	NA
UHGV-0045432_53	PHROG	phrog_18586	NA	unknown function
UHGV-0045432_53	UniRef90	UniRef90_UPI00195789EA	restriction endonuclease	NA
UHGV-0045432_53	eggNOG-mapper	913865.DOT_3033	NA	NA
UHGV-0045432_53	Structural annotation	PF04471, COG1715	NA	NA
UHGV-0045432_54	eggNOG-mapper	457396.CSBG_03567	NA	NA