UHGV-0045439

Genome information

vOTU vOTU-020045

Genome length 35,583 bps

CDS count 54

Completeness 86.80% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045439
vOTU ID	vOTU-020045
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_18334
BioSample	SAMEA1966253
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.47
Jumbo phage	No

Genome content
Genome length	35,583 bps
GC content	40.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.92%
Average CDS length	614.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045439_1	PHROG	phrog_36767	NA	unknown function
UHGV-0045439_1	UniRef90	UniRef90_A0A7X9H1B7	NA	NA
UHGV-0045439_1	Pfam	PF10049	NA	DUF2283
UHGV-0045439_1	Structural annotation	PF10049, COG5428	NA	NA
UHGV-0045439_2	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0045439_3	UniRef90	UniRef90_UPI001D52BF63	NA	NA
UHGV-0045439_3	eggNOG-mapper	521045.Kole_1291	NA	NA
UHGV-0045439_3	Pfam	PF11950	NA	DUF3467
UHGV-0045439_4	UniRef90	UniRef90_A0A1C7HSY4	CHAP domain-containing protein	NA
UHGV-0045439_4	eggNOG-mapper	658659.HMPREF0983_03290	lysozyme activity	NA
UHGV-0045439_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0045439_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0045439_4	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0045439_5	PHROG	phrog_1863	NA	unknown function
UHGV-0045439_5	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0045439_7	PHROG	phrog_16267	NA	unknown function
UHGV-0045439_7	UniRef90	UniRef90_G1VS14	Peptidase S74 domain-containing protein	NA
UHGV-0045439_7	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0045439_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0045439_7	COG	COG4926	Phage-related protein	NA
UHGV-0045439_7	Structural annotation	PF05113, PF03944, NF033848, NF033675, COG3500	NA	NA
UHGV-0045439_8	PHROG	phrog_1401	NA	unknown function
UHGV-0045439_8	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-0045439_8	Structural annotation	PF07761	NA	NA
UHGV-0045439_9	PHROG	phrog_2566	NA	unknown function
UHGV-0045439_9	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0045439_10	PHROG	phrog_1194	NA	unknown function
UHGV-0045439_10	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-0045439_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0045439_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0045439_11	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-0045439_11	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-0045439_11	COG	COG1511	NA	NA
UHGV-0045439_12	PHROG	phrog_8355	NA	unknown function
UHGV-0045439_12	UniRef90	UniRef90_UPI001E3020BE	Gp15 family bacteriophage protein	NA
UHGV-0045439_12	eggNOG-mapper	552396.HMPREF0863_01643	NA	NA
UHGV-0045439_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0045439_13	PHROG	phrog_8300	NA	unknown function
UHGV-0045439_13	eggNOG-mapper	1232449.BAHV02000018_gene1519	NA	NA
UHGV-0045439_13	Structural annotation	PF06896	NA	NA
UHGV-0045439_14	PHROG	phrog_820	major tail protein	tail
UHGV-0045439_14	UniRef90	UniRef90_A0A7D6ZFT1	Ig-like domain-containing protein	NA
UHGV-0045439_14	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-0045439_14	COG	COG5492	NA	NA
UHGV-0045439_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0045439_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0045439_15	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-0045439_15	eggNOG-mapper	552396.HMPREF0863_01640	NA	NA
UHGV-0045439_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0045439_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0045439_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0045439_16	UniRef90	UniRef90_UPI000246D598	minor capsid protein	NA
UHGV-0045439_16	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-0045439_17	PHROG	phrog_8710	NA	unknown function
UHGV-0045439_17	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-0045439_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0045439_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0045439_18	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0045439_19	PHROG	phrog_1378	NA	unknown function
UHGV-0045439_19	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0045439_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0045439_20	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-0045439_20	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0045439_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0045439_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0045439_21	eggNOG-mapper	552396.HMPREF0863_01634	NA	NA
UHGV-0045439_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0045439_24	UniRef90	UniRef90_A0A6B1RQY7	Capsid protein	NA
UHGV-0045439_24	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-0045439_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0045439_24	Structural annotation	PF06152	NA	NA
UHGV-0045439_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0045439_25	UniRef90	UniRef90_A0A1C6JYD4	Phage portal protein, putative, A118 family	NA
UHGV-0045439_25	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0045439_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0045439_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0045439_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0045439_26	UniRef90	UniRef90_U5F7S3	PBSX family phage terminase, large subunit	NA
UHGV-0045439_26	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0045439_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0045439_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0045439_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0045439_27	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0045439_27	UniRef90	UniRef90_UPI001F065150	terminase small subunit	NA
UHGV-0045439_27	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0045439_27	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0045439_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0045439_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0045439_27	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0045439_29	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0045439_29	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0045439_29	UniRef90	UniRef90_G1VRZ3	N6_Mtase domain-containing protein	NA
UHGV-0045439_29	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0045439_29	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0045439_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0045439_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0045439_29	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0045439_30	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-0045439_32	UniRef90	UniRef90_R6VZG6	DNA methylase	NA
UHGV-0045439_34	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0045439_35	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045439_35	UniRef90	UniRef90_UPI0004660BB2	conserved phage C-terminal domain-containing protein	NA
UHGV-0045439_35	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0045439_35	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0045439_37	PHROG	phrog_32087	NA	unknown function
UHGV-0045439_37	UniRef90	UniRef90_UPI000C817A46	NA	NA
UHGV-0045439_37	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0045439_37	Pfam	PF06356	NA	DUF1064
UHGV-0045439_38	PHROG	phrog_398	NA	unknown function
UHGV-0045439_38	UniRef90	UniRef90_UPI00136CF42E	putative HNHc nuclease	NA
UHGV-0045439_38	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0045439_38	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0045439_38	Structural annotation	PF16784	NA	NA
UHGV-0045439_39	PHROG	phrog_18107	NA	unknown function
UHGV-0045439_39	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0045439_39	eggNOG-mapper	536233.CLO_1545	NA	NA
UHGV-0045439_39	Structural annotation	PF05037	NA	NA
UHGV-0045439_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0045439_40	UniRef90	UniRef90_UPI001B3C84DE	siphovirus Gp157 family protein	NA
UHGV-0045439_40	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-0045439_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0045439_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0045439_41	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045439_41	UniRef90	UniRef90_UPI000C06E88C	AAA family ATPase	NA
UHGV-0045439_41	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0045439_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0045439_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0045439_42	Structural annotation	PF10922	NA	NA
UHGV-0045439_45	PHROG	phrog_2113	NA	unknown function
UHGV-0045439_45	UniRef90	UniRef90_A0A847CHZ4	HTH domain-containing protein	NA
UHGV-0045439_45	eggNOG-mapper	1160721.RBI_I00213	NA	NA
UHGV-0045439_45	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0045439_49	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045439_49	UniRef90	UniRef90_UPI00156E7345	NA	NA
UHGV-0045439_49	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0045439_49	Structural annotation	COG2250	NA	NA
UHGV-0045439_50	PHROG	phrog_14088	NA	unknown function
UHGV-0045439_50	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0045439_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0045439_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045439_51	UniRef90	UniRef90_R6V5S4	HTH cro/C1-type domain-containing protein	NA
UHGV-0045439_51	eggNOG-mapper	999413.HMPREF1094_02044	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045439_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045439_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045439_51	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0045439_53	UniRef90	UniRef90_UPI000AE95F57	NA	NA
UHGV-0045439_53	eggNOG-mapper	1121333.JMLH01000005_gene506	serine threonine protein kinase	NA
UHGV-0045439_53	AcrCatalog	cluster_71895	NA	NA
UHGV-0045439_53	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0045439_53	Structural annotation	PF11611, PF03843, MF_00791, MF_01959, TIGR03943, NF003465, COG3065, COG2967	NA	NA
UHGV-0045439_54	KOfam	K14059	int; integrase	NA
UHGV-0045439_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0045439_54	UniRef90	UniRef90_UPI001C37EA58	site-specific integrase	NA
UHGV-0045439_54	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-0045439_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0045439_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045439_54	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0045439_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045439_54	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4973	NA	NA