UHGV-0045545

Genome information

Genome length 38,388 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9589

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045545
vOTU ID	vOTU-063795
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3825
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9589
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.62
Jumbo phage	No

Genome content
Genome length	38,388 bps
GC content	28.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	87.02%
Average CDS length	549.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045545_1	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045545_1	UniRef90	UniRef90_A0A1C6JGW1	DnaA_N domain-containing protein	NA
UHGV-0045545_1	eggNOG-mapper	796940.HMPREF9628_02180	DnaD domain protein	NA
UHGV-0045545_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045545_1	Structural annotation	PF11638, PF07261	NA	NA
UHGV-0045545_2	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0045545_2	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0045545_2	UniRef90	UniRef90_A0A1C6JGT4	ALP_N domain-containing protein	NA
UHGV-0045545_2	eggNOG-mapper	1582152.A0A0A8WI45_9CAUD	NA	NA
UHGV-0045545_2	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0045545_2	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0045545_3	PHROG	phrog_14888	NA	unknown function
UHGV-0045545_5	eggNOG-mapper	573061.Clocel_2949	NA	NA
UHGV-0045545_6	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0045545_6	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0045545_6	UniRef90	UniRef90_A0A174I9E9	DNA-invertase Hin	NA
UHGV-0045545_6	eggNOG-mapper	1414720.CBYM010000017_gene3117	Resolvase, N terminal domain	NA
UHGV-0045545_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0045545_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0045545_6	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0045545_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0045545_7	PHROG	phrog_435	endolysin	lysis
UHGV-0045545_7	UniRef90	UniRef90_A0A174GRH6	Peptidoglycan hydrolase	NA
UHGV-0045545_7	eggNOG-mapper	1414720.CBYM010000001_gene715	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045545_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0045545_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045545_8	UniRef90	UniRef90_A0A1C6JGW2	Small integral membrane protein	NA
UHGV-0045545_8	eggNOG-mapper	1069533.Sinf_0801	COG5546 Small integral membrane protein	NA
UHGV-0045545_8	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0045545_8	COG	COG5546	NA	NA
UHGV-0045545_9	PHROG	phrog_1863	NA	unknown function
UHGV-0045545_9	eggNOG-mapper	1414720.CBYM010000001_gene713	NA	NA
UHGV-0045545_11	PHROG	phrog_2232	NA	unknown function
UHGV-0045545_11	UniRef90	UniRef90_UPI001CCCDE3F	NA	NA
UHGV-0045545_11	eggNOG-mapper	1211817.CCAT010000053_gene2115	NA	NA
UHGV-0045545_11	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0045545_11	COG	COG5470	NA	NA
UHGV-0045545_11	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0045545_12	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0045545_12	PHROG	phrog_7158	NA	unknown function
UHGV-0045545_12	UniRef90	UniRef90_A0A1C6JHI1	Calcineurin-like phosphoesterase superfamily domain	NA
UHGV-0045545_12	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0045545_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0045545_12	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0045545_12	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0045545_12	Structural annotation	PF10651, PF16255, NF040788, COG2755, COG5456	NA	NA
UHGV-0045545_13	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0045545_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0045545_13	UniRef90	UniRef90_A0A174D559	Phage structural protein	NA
UHGV-0045545_13	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0045545_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0045545_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0045545_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0045545_13	COG	COG4926	Phage-related protein	NA
UHGV-0045545_13	Structural annotation	PF14594, TIGR01665, COG4926, COG3942	NA	NA
UHGV-0045545_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0045545_14	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0045545_14	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0045545_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0045545_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0045545_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0045545_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0045545_15	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0045545_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0045545_15	UniRef90	UniRef90_A0A1C6JHC9	Phage-related minor tail protein	NA
UHGV-0045545_15	eggNOG-mapper	396034.A6XMK6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0045545_15	Structural annotation	COG5280	NA	NA
UHGV-0045545_16	PHROG	phrog_709	NA	unknown function
UHGV-0045545_16	UniRef90	UniRef90_K6DJ01	Prophage pi2 protein 40	NA
UHGV-0045545_16	eggNOG-mapper	365048.Q0H232_9CAUD	NA	NA
UHGV-0045545_16	Structural annotation	PF11836	NA	NA
UHGV-0045545_17	PHROG	phrog_88	major tail protein	tail
UHGV-0045545_17	UniRef90	UniRef90_A0A1C6JHQ3	Phage major tail protein, phi13 family	NA
UHGV-0045545_17	eggNOG-mapper	1497679.EP56_05760	phage tail protein	NA
UHGV-0045545_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0045545_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0045545_18	PHROG	phrog_78	tail terminator	connector
UHGV-0045545_18	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0045545_18	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0045545_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0045545_19	UniRef90	UniRef90_UPI00105617E0	HK97 gp10 family phage protein	NA
UHGV-0045545_19	eggNOG-mapper	1341151.ASZU01000004_gene257	NA	NA
UHGV-0045545_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0045545_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0045545_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0045545_20	UniRef90	UniRef90_F2JNC8	Prophage pi2 protein	NA
UHGV-0045545_20	eggNOG-mapper	642492.Clole_1861	head-tail adaptor	NA
UHGV-0045545_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0045545_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0045545_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0045545_21	eggNOG-mapper	457396.CSBG_01050	NA	NA
UHGV-0045545_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045545_22	UniRef90	UniRef90_A0A1C6JHX3	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045545_22	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-0045545_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045545_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045545_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045545_22	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045545_23	KOfam	K06904	NA	NA
UHGV-0045545_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0045545_23	UniRef90	UniRef90_A0A1C6JHE9	Phage prohead protease, HK97 family	NA
UHGV-0045545_23	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-0045545_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0045545_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0045545_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0045545_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0045545_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045545_24	UniRef90	UniRef90_A0A1C6JHN8	Phage portal protein, HK97 family	NA
UHGV-0045545_24	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0045545_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045545_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045545_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045545_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045545_25	UniRef90	UniRef90_A0A1C6JHP9	Phage terminase-like protein, large subunit	NA
UHGV-0045545_25	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0045545_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045545_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045545_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045545_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045545_26	PHROG	phrog_1066	NA	unknown function
UHGV-0045545_26	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-0045545_26	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-0045545_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0045545_27	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0045545_27	UniRef90	UniRef90_A0A1C6JI31	HNH endonuclease	NA
UHGV-0045545_27	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-0045545_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045545_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045545_27	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0045545_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0045545_28	UniRef90	UniRef90_A0A316MA76	Transposase	NA
UHGV-0045545_28	eggNOG-mapper	457396.CSBG_01043	transposase activity	NA
UHGV-0045545_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0045545_28	Structural annotation	PF07141	NA	NA
UHGV-0045545_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0045545_29	PHROG	phrog_216	integrase	integration and excision
UHGV-0045545_29	UniRef90	UniRef90_A0A1C6JHR5	Tyrosine recombinase XerD	NA
UHGV-0045545_29	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-0045545_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045545_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045545_29	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0045545_30	PHROG	phrog_3928	NA	unknown function
UHGV-0045545_30	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0045545_31	UniRef90	UniRef90_UPI0018A8EB18	NA	NA
UHGV-0045545_31	eggNOG-mapper	1414720.CBYM010000040_gene1638	NA	NA
UHGV-0045545_31	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0045545_39	PHROG	phrog_17499	NA	unknown function
UHGV-0045545_39	UniRef90	UniRef90_A0A174D8Q8	Putative CDC2L2 protein	NA
UHGV-0045545_39	eggNOG-mapper	1414720.CBYM010000040_gene1634	NA	NA
UHGV-0045545_40	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-0045545_44	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0045545_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0045545_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045545_45	UniRef90	UniRef90_A0A1C6JJ89	DNA replication protein	NA
UHGV-0045545_45	eggNOG-mapper	1414720.CBYM010000001_gene676	PFAM IstB-like ATP binding protein	NA
UHGV-0045545_45	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0045545_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0045545_45	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0045545_46	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045545_46	UniRef90	UniRef90_A0A1C6JID6	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0045545_46	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0045545_46	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0045545_46	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0045545_46	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3388	NA	NA
UHGV-0045545_49	UniRef90	UniRef90_A0A1C6JI65	Spo0E like sporulation regulatory protein	NA
UHGV-0045545_49	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0045545_49	Structural annotation	PF09388	NA	NA
UHGV-0045545_51	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0045545_51	UniRef90	UniRef90_UPI0018AC2428	Rha family transcriptional regulator	NA
UHGV-0045545_51	eggNOG-mapper	1414720.CBYM010000002_gene582	ORF6C domain	NA
UHGV-0045545_51	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0045545_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0045545_51	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0045545_51	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0045545_51	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0045545_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0045545_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045545_53	UniRef90	UniRef90_A0A1C6JIL6	Antitoxin PezA	NA
UHGV-0045545_53	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0045545_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045545_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045545_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0045545_55	UniRef90	UniRef90_A0A1C6JIL2	Transcriptional regulator, y4mF family	NA
UHGV-0045545_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045545_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0045545_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045545_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045545_56	UniRef90	UniRef90_A0A1C6KNQ1	HTH-type transcriptional regulator immR	NA
UHGV-0045545_56	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0045545_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045545_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045545_56	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0045545_57	PHROG	phrog_2172	NA	unknown function
UHGV-0045545_57	UniRef90	UniRef90_A0A1C6JIP7	Protein involved in initiation of plasmid replication	NA
UHGV-0045545_57	eggNOG-mapper	1476973.JMMB01000003_gene45	Initiator Replication protein	NA
UHGV-0045545_57	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0045545_57	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0045545_58	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0045545_58	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0045545_58	UniRef90	UniRef90_A0A1C6JIN8	Plasmid segregation protein ParM	NA
UHGV-0045545_58	eggNOG-mapper	999411.HMPREF1092_03292	Heat shock 70 kDa protein	NA
UHGV-0045545_58	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0045545_58	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0045545_58	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-0045545_58	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0045545_59	PHROG	phrog_14312	NA	unknown function
UHGV-0045545_61	eggNOG-mapper	573061.Clocel_2949	NA	NA
UHGV-0045545_61	Structural annotation	PF05171, TIGR04108, COG3721	NA	NA