UHGV-0045552

Genome information

Genome length 35,667 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9584

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045552
vOTU ID	vOTU-014167
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3818
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9584
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.05
Jumbo phage	No

Genome content
Genome length	35,667 bps
GC content	32.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.97%
Average CDS length	576.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045552_1	eggNOG-mapper	457412.RSAG_00804	NA	NA
UHGV-0045552_1	AcrCatalog	cluster_11616	NA	NA
UHGV-0045552_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0045552_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0045552_2	UniRef90	UniRef90_A5Z7P5	Resolvase, N-terminal domain protein	NA
UHGV-0045552_2	eggNOG-mapper	457412.RSAG_00803	Resolvase, N terminal domain	NA
UHGV-0045552_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0045552_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0045552_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0045552_2	Pfam	PF14287	NA	DUF4368
UHGV-0045552_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0045552_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0045552_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0045552_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0045552_3	UniRef90	UniRef90_A0A1C6EDA6	Recombinase	NA
UHGV-0045552_3	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0045552_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0045552_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0045552_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0045552_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0045552_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0045552_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0045552_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045552_5	UniRef90	UniRef90_A0A1C6EDG6	Transcriptional repressor DicA	NA
UHGV-0045552_5	eggNOG-mapper	1151292.QEW_0314	DNA-binding helix-turn-helix protein	NA
UHGV-0045552_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045552_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045552_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0045552_9	Structural annotation	PF20385	NA	NA
UHGV-0045552_14	eggNOG-mapper	1232446.BAIE02000025_gene2924	NA	NA
UHGV-0045552_17	PHROG	phrog_1029	NA	unknown function
UHGV-0045552_17	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-0045552_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0045552_18	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0045552_19	PHROG	phrog_15768	NA	unknown function
UHGV-0045552_19	UniRef90	UniRef90_A0A417IQT8	NA	NA
UHGV-0045552_19	eggNOG-mapper	1158294.JOMI01000009_gene1122	NA	NA
UHGV-0045552_19	Pfam	PF19808	NA	DUF6291
UHGV-0045552_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0045552_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0045552_22	UniRef90	UniRef90_A0A415XFD4	Tyr recombinase domain-containing protein	NA
UHGV-0045552_22	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0045552_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045552_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045552_22	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0045552_23	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0045552_23	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-0045552_23	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-0045552_23	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0045552_24	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045552_24	UniRef90	UniRef90_A0A1C6EF99	HNHc domain-containing protein	NA
UHGV-0045552_24	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-0045552_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0045552_24	Structural annotation	PF13392	NA	NA
UHGV-0045552_28	Structural annotation	TIGR01636	NA	NA
UHGV-0045552_29	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045552_29	UniRef90	UniRef90_A0A1C6EG04	HNH endonuclease	NA
UHGV-0045552_29	eggNOG-mapper	1232446.BAIE02000011_gene1603	HNH endonuclease domain protein	NA
UHGV-0045552_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045552_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045552_30	PHROG	phrog_104	portal protein	head and packaging
UHGV-0045552_30	UniRef90	UniRef90_A0A1C6EG02	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0045552_30	eggNOG-mapper	1232446.BAIE02000011_gene1602	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0045552_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0045552_31	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0045552_31	UniRef90	UniRef90_UPI001C2C9BDC	ADP-ribosyltransferase	NA
UHGV-0045552_31	eggNOG-mapper	883110.HMPREF9260_00663	NA	NA
UHGV-0045552_31	Pfam	PF14076	NA	DUF4258
UHGV-0045552_31	Structural annotation	PF14076	NA	NA
UHGV-0045552_33	PHROG	phrog_30609	NA	unknown function
UHGV-0045552_33	Structural annotation	PF21485	NA	NA
UHGV-0045552_34	PHROG	phrog_17688	NA	unknown function
UHGV-0045552_34	UniRef90	UniRef90_A0A1C6EGF9	Phage terminase-like protein, large subunit	NA
UHGV-0045552_34	eggNOG-mapper	938278.CAJO01000051_gene790	phage terminase, large subunit	NA
UHGV-0045552_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045552_34	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0045552_35	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0045552_35	UniRef90	UniRef90_UPI000E52A532	phage scaffold protein	NA
UHGV-0045552_35	eggNOG-mapper	1232446.BAIE02000011_gene1597	NA	NA
UHGV-0045552_35	Structural annotation	PF14265	NA	NA
UHGV-0045552_36	PHROG	phrog_32396	NA	unknown function
UHGV-0045552_36	UniRef90	UniRef90_A0A1C6EHK1	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045552_36	eggNOG-mapper	665950.HMPREF1025_02530	Phage capsid family	NA
UHGV-0045552_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045552_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045552_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045552_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0045552_37	UniRef90	UniRef90_A0A1C6EGQ6	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0045552_37	eggNOG-mapper	1232446.BAIE02000011_gene1595	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0045552_37	Pfam	PF09355	NA	Phage_Gp19
UHGV-0045552_37	Structural annotation	PF09355	NA	NA
UHGV-0045552_38	PHROG	phrog_501	head closure Hc1	connector
UHGV-0045552_38	UniRef90	UniRef90_R5J5U6	ORF34	NA
UHGV-0045552_38	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0045552_38	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0045552_39	PHROG	phrog_387	neck protein	connector
UHGV-0045552_39	eggNOG-mapper	936375.HMPREF1152_0683	NA	NA
UHGV-0045552_40	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0045552_40	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0045552_40	Structural annotation	PF06141	NA	NA
UHGV-0045552_41	PHROG	phrog_117	major tail protein	tail
UHGV-0045552_41	UniRef90	UniRef90_A0A7C7AKZ9	Phage tail protein	NA
UHGV-0045552_41	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0045552_41	COG	COG5492	NA	NA
UHGV-0045552_41	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0045552_42	PHROG	phrog_1526	NA	unknown function
UHGV-0045552_43	PHROG	phrog_1633	NA	unknown function
UHGV-0045552_43	UniRef90	UniRef90_UPI001939D555	NA	NA
UHGV-0045552_43	eggNOG-mapper	665950.HMPREF1025_02523	NA	NA
UHGV-0045552_43	Structural annotation	PF17318	NA	NA
UHGV-0045552_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0045552_44	UniRef90	UniRef90_A0A1C6EH41	Phage-related protein	NA
UHGV-0045552_44	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0045552_44	COG	COG1511	NA	NA
UHGV-0045552_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0045552_45	UniRef90	UniRef90_A0A1C6EHM6	Phage-related protein	NA
UHGV-0045552_45	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0045552_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0045552_45	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0045552_46	PHROG	phrog_3558	tail protein	tail
UHGV-0045552_46	UniRef90	UniRef90_A0A1C6EI78	Phage minor structural protein, N-terminal region	NA
UHGV-0045552_46	eggNOG-mapper	97139.C824_05957	Phage minor structural protein, N-terminal	NA
UHGV-0045552_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0045552_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0045552_46	COG	COG4926	Phage-related protein	NA
UHGV-0045552_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0045552_47	PHROG	phrog_372	tail protein	tail
UHGV-0045552_47	UniRef90	UniRef90_UPI0018E46574	NA	NA
UHGV-0045552_47	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0045552_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0045552_47	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0045552_52	PHROG	phrog_30034	NA	unknown function
UHGV-0045552_52	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0045552_52	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0045552_53	PHROG	phrog_199	holin	lysis
UHGV-0045552_53	UniRef90	UniRef90_A0A1C6EI41	Phage-related holin (Lysis protein)	NA
UHGV-0045552_53	eggNOG-mapper	1504823.CCMM01000008_gene1022	toxin secretion phage lysis holin	NA
UHGV-0045552_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0045552_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0045552_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0045552_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0045552_54	PHROG	phrog_918	NA	unknown function
UHGV-0045552_54	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0045552_54	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0045552_54	Pfam	PF19791	NA	DUF6275
UHGV-0045552_54	Structural annotation	PF19791	NA	NA
UHGV-0045552_55	PHROG	phrog_1048	NA	unknown function
UHGV-0045552_55	UniRef90	UniRef90_UPI001D0A8EC5	NA	NA
UHGV-0045552_55	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0045552_55	Pfam	PF11195	NA	DUF2829
UHGV-0045552_55	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0045552_55	Structural annotation	PF11195	NA	NA
UHGV-0045552_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0045552_56	PHROG	phrog_670	endolysin	lysis
UHGV-0045552_56	UniRef90	UniRef90_A0A1Q6MQM1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0045552_56	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0045552_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0045552_56	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0045552_56	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0045552_56	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA